myRT

myRT report for GCA_002358875.1_ASM235887v1

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Seq: DEPS01000038.1 TPA_asm: Lachnospiraceae bacterium UBA3386 UBA3386_contig_147, whole genome shotgun sequence (21009 bp)
Overview 1 RT 1: 12646-20259 bp Neighborhood of RT #1 [12646, 20259] Csx1_III-U RVT-CRISPR COG4951 Feature: gene Location: 12646-12813 bp Feature: gene Location: 13498-15705 bp Feature: domain Description: Csx1_III-U Location: 14350-15604 bp Feature: domain Description: Csx1 _III-U Location: 1 4350-1 5604 bp Feature: gene Location: 15825-19211 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 16035-16638 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 6035-1 6638 bp Feature: domain Description: COG4951 Location: 17754-18267 bp Feature: domain Description: COG4951 Location: 1 7754-1 8267 bp Feature: gene Location: 19679-19894 bp Feature: gene Location: 20113-20259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, COG4951 (Uncharacterized protein )

Seq: DEPS01000162.1 TPA_asm: Lachnospiraceae bacterium UBA3386 UBA3386_contig_3985, whole genome shotgun sequence (29953 bp)
Overview 1 RT 1: 12875-20044 bp Neighborhood of RT #1 [12875, 20046] dnaE RVT-GII dnaE Bacterial_PFK Feature: gene Location: 12875-14698 bp Feature: domain Description: dnaE Location: 12878-14684 bp Feature: domain Description: dnaE Location: 12 878-14684 bp Feature: gene Location: 14714-14905 bp Feature: gene Location: 15587-16777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15905-16610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15905-16610 bp Feature: gene Location: 17013-18935 bp Feature: domain Description: dnaE Location: 17037-18930 bp Feature: domain Description: dnaE Location: 17037-18930 bp Feature: gene Location: 19072-20046 bp Feature: domain Description: Bacterial_PFK Location: 19099-20044 bp Feature: domain Description: Bacterial_PFK Location: 19099-2 0044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaE (PRK07374), RVT-GII, Bacterial_PFK (cd00763)

Seq: DEPS01000128.1 TPA_asm: Lachnospiraceae bacterium UBA3386 UBA3386_contig_6262, whole genome shotgun sequence (16989 bp)
Overview 1 RT 1: 5467-10525 bp Neighborhood of RT #1 [5467, 10525] RVT-GII COG4646 HepA Feature: gene Location: 5467-5613 bp Feature: gene Location: 5626-5826 bp Feature: gene Location: 5947-7806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205-6922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205-6922 bp Feature: gene Location: 8026-10152 bp Feature: domain Description: COG4646 Location: 8029-8587 bp Feature: domain Description: COG4646 Location: 8029-8587 bp Feature: domain Description: HepA Location: 8848-9112 bp Feature: domain Description: HepA Location: 8848-9112 bp Feature: gene Location: 10382-10525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4646 (Adenine-specific DNA methylase, N12 class ), HepA (COG0553)