myRT

myRT report for GCA_002360295.1_ASM236029v1

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Seq: DEQI01000087.1 TPA_asm: Planococcaceae bacterium UBA3370 UBA3370_contig_14125, whole genome shotgun sequence (20225 bp)
Overview 1 RT 1: 10245-16216 bp Neighborhood of RT #1 [10245, 16725] PRTRC_A PRTRC_ThiF RVT-GII KOG4768 PRK05563 Feature: gene Location: 10245-11249 bp Feature: domain Description: PRTRC_A Location: 10647-11148 bp Feature: domain Description: PRTRC_A Location: 1 0647-1 1 1 48 bp Feature: gene Location: 11251-11886 bp Feature: domain Description: PRTRC_ThiF Location: 11272-11677 bp Feature: domain Description: PRTRC_ThiF Location: 1 1 272-1 1 677 bp Feature: gene Location: 12553-14673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12835-13906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2835-1 3906 bp Feature: domain Description: KOG4768 Location: 14050-14641 bp Feature: domain Description: KOG4768 Location: 1 4050-1 4641 bp Feature: gene Location: 14857-15021 bp Feature: gene Location: 15049-16725 bp Feature: domain Description: PRK05563 Location: 15088-16216 bp Feature: domain Description: PRK05563 Location: 1 5088-1 621 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_A (TIGR03735), PRTRC_ThiF (TIGR03736), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), PRK05563 (DNA polymerase III subunits gamma and tau; Validated)

Seq: DEQI01000212.1 TPA_asm: Planococcaceae bacterium UBA3370 UBA3370_contig_2067, whole genome shotgun sequence (4800 bp)
Overview 1 RT 1: 147-3778 bp Neighborhood of RT #1 [147, 3780] RVT-GII GIIM PRK04319 Feature: gene Location: 147-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 -960 bp Feature: domain Description: GIIM Note: maturase Location: 1011-1227 bp Feature: domain Description: GIIM Note: maturase Location: 1011-12 2 7 bp Feature: gene Location: 1665-1898 bp Feature: gene Location: 2053-3780 bp Feature: domain Description: PRK04319 Location: 2071-3778 bp Feature: domain Description: PRK04319 Location: 2 071-3778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK04319 (acetyl-CoA synthetase; Provisional)

Seq: DEQI01000215.1 TPA_asm: Planococcaceae bacterium UBA3370 UBA3370_contig_378, whole genome shotgun sequence (28536 bp)
Overview 1 RT 1: 5736-12049 bp Neighborhood of RT #1 [5736, 12049] PRK06751 DUF3854 RVT-GII HNHc dnaG Feature: gene Location: 5736-6302 bp Feature: domain Description: PRK06751 Location: 5739-6300 bp Feature: domain Description: PRK06751 Location: 573 9-63 00 bp Feature: gene Location: 6322-6792 bp Feature: domain Description: DUF3854 Location: 6517-6709 bp Feature: domain Description: DUF3 854 Location: 6517-6709 bp Feature: gene Location: 6799-8616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7096-7801 bp Feature: domain Description: HNHc Note: nucleases Location: 8362-8500 bp Feature: domain Description: HNHc Note: nucleases Location: 83 62-8500 bp Feature: gene Location: 9354-10538 bp Feature: domain Description: dnaG Location: 9504-10077 bp Feature: domain Description: dnaG Location: 9504-10077 bp Feature: gene Location: 10682-12049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06751 (single-stranded DNA-binding protein; Provisional), DUF3854 (pfam12965), RVT-GII, HNHc (smart00507), dnaG (TIGR01391)

Seq: DEQI01000222.1 TPA_asm: Planococcaceae bacterium UBA3370 UBA3370_contig_6328, whole genome shotgun sequence (8832 bp)
Overview 1 RT 1: 2082-8774 bp Neighborhood of RT #1 [2082, 8830] YeiB addA_Gpos RVT-GII Intron_maturas2 Feature: gene Location: 2082-3254 bp Feature: domain Description: YeiB Location: 2094-3243 bp Feature: domain Description: YeiB Location: 2094 -324 3 bp Feature: gene Location: 4489-6759 bp Feature: domain Description: addA_Gpos Location: 4492-6748 bp Feature: domain Description: addA_Gpos Location: 4 4 92-674 8 bp Feature: gene Location: 7136-8830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7463-8294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 63-8294 bp Feature: domain Description: Intron_maturas2 Location: 8414-8774 bp Feature: domain Description: Intron_maturas2 Location: 84 14 -8774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeiB (COG2311), addA_Gpos (TIGR02785), RVT-GII, Intron_maturas2 (pfam01348)