myRT

myRT report for GCA_002360435.1_ASM236043v1

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Seq: DEQM01000008.1 TPA_asm: Idiomarina abyssalis isolate UBA3366 UBA3366_contig_1177, whole genome shotgun sequence (57014 bp)
Overview 1 RT 1: 45921-54381 bp Neighborhood of RT #1 [45921, 54767] PRK09692 RVT-UG8 RVT-UG3 DUF45 COG0610 Feature: gene Location: 45921-47180 bp Feature: domain Description: PRK09692 Location: 45966-47166 bp Feature: domain Description: PRK09692 Location: 45966-471 66 bp Feature: gene Location: 47229-47444 bp Feature: gene Location: 47603-49498 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 48101-48539 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 481 01 -48539 bp Feature: gene Location: 49491-50669 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 49776-50238 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 49776-50238 bp Feature: gene Location: 50697-51482 bp Feature: domain Description: DUF45 Location: 50826-51453 bp Feature: domain Description: DUF45 Location: 50826-51 453 bp Feature: gene Location: 51486-54767 bp Feature: domain Description: COG0610 Location: 51516-54381 bp Feature: domain Description: COG061 0 Location: 51 51 6-54381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG8, RVT-UG3, DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: DEQM01000013.1 TPA_asm: Idiomarina abyssalis isolate UBA3366 UBA3366_contig_2322, whole genome shotgun sequence (187021 bp)
Overview 1 RT 1: 179137-183423 bp Neighborhood of RT #1 [179137, 183545] Nterm_IS4 DDE_Tnp_1 RVT-GII GIIM PBP2_CysL_like LysR Feature: gene Location: 179137-180462 bp Feature: domain Description: Nterm_IS4 Location: 179188-179458 bp Feature: domain Description: Nterm_IS4 Location: 179188-179458 bp Feature: domain Description: DDE_Tnp_1 Location: 179512-180190 bp Feature: domain Description: DDE_Tnp_1 Location: 179512 -180190 bp Feature: gene Location: 180542-181045 bp Feature: gene Location: 181255-182592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181534-182155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181534-182 155 bp Feature: domain Description: GIIM Note: maturase Location: 182203-182422 bp Feature: domain Description: GIIM Note: maturase Location: 182 2 03-182 42 2 bp Feature: gene Location: 182678-182917 bp Feature: domain Description: PBP2_CysL_like Location: 182699-182897 bp Feature: domain Description: PBP2 _CysL_like Location: 182 699-182 897 bp Feature: gene Location: 182874-183545 bp Feature: domain Description: LysR Location: 182880-183423 bp Feature: domain Description: LysR Location: 182 880-18342 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PBP2_CysL_like (cd08420), LysR (COG0583)