myRT

myRT report for GCA_002360535.1_ASM236053v1

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Seq: DEQR01000059.1 TPA_asm: Thiobacillus sp. UBA3361 UBA3361_contig_3, whole genome shotgun sequence (140760 bp)
Overview 1 RT 1: 71381-74650 bp Neighborhood of RT #1 [71381, 74655] PIN_VapC-like COG4190 RVT-GII DUF4160 Feature: gene Location: 71381-71797 bp Feature: domain Description: PIN_VapC-like Location: 71387-71756 bp Feature: domain Description: PIN_VapC-like Location: 71 387-71 756 bp Feature: gene Location: 71839-72195 bp Feature: domain Description: COG4190 Location: 71842-72184 bp Feature: domain Description: COG41 90 Location: 71 842-721 84 bp Feature: gene Location: 72324-73817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72735-73425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72735-73425 bp Feature: gene Location: 73823-74212 bp Feature: gene Location: 74500-74655 bp Feature: domain Description: DUF4160 Location: 74527-74650 bp Feature: domain Description: DUF41 60 Location: 74527-74650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), COG4190 (Predicted transcriptional regulator ), RVT-GII, DUF4160 (pfam13711)

Seq: DEQR01000078.1 TPA_asm: Thiobacillus sp. UBA3361 UBA3361_contig_575, whole genome shotgun sequence (62012 bp)
Overview 1 RT 1: 27969-32417 bp Neighborhood of RT #1 [27969, 32443] MTH1175 RocR RVT-DGRs MutS_I DUF1566 Avd_like Feature: gene Location: 27969-28406 bp Feature: domain Description: MTH1175 Location: 27972-28269 bp Feature: domain Description: MTH1175 Location: 2 7972 -2 82 69 bp Feature: gene Location: 28687-29979 bp Feature: domain Description: RocR Location: 28705-29971 bp Feature: domain Description: RocR Location: 2 8705-2 9971 bp Feature: gene Location: 30250-31752 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30427-31126 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3042 7-3112 6 bp Feature: domain Description: MutS_I Location: 31435-31666 bp Feature: domain Description: MutS_I Location: 31435-31666 bp Feature: gene Location: 31759-32043 bp Feature: domain Description: DUF1566 Location: 31909-32032 bp Feature: domain Description: DUF1566 Location: 31909-32 032 bp Feature: gene Location: 32081-32443 bp Feature: domain Description: Avd_like Location: 32108-32417 bp Feature: domain Description: Avd_like Location: 32 108-32 417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTH1175, RocR (COG3829), RVT-DGRs, MutS_I (pfam01624), DUF1566 (pfam07603), Avd_like (cd16376)

Seq: DEQR01000056.1 TPA_asm: Thiobacillus sp. UBA3361 UBA3361_contig_837, whole genome shotgun sequence (60508 bp)
Overview 1 RT 1: 11633-15607 bp Neighborhood of RT #1 [11633, 15627] Avd_like DUF1566 RVT-DGRs MutS_I argC PRK13623 YacG Feature: gene Location: 11633-12049 bp Feature: domain Description: Avd_like Location: 11660-11969 bp Feature: domain Description: Avd_like Location: 11660-11969 bp Feature: gene Location: 12246-12377 bp Feature: domain Description: DUF1566 Location: 12252-12366 bp Feature: domain Description: DUF1566 Location: 12252-123 66 bp Feature: gene Location: 12384-14939 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12561-13251 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12561-13 251 bp Feature: domain Description: MutS_I Location: 13560-13794 bp Feature: domain Description: MutS_I Location: 13 560-13 794 bp Feature: domain Description: argC Location: 13902-14937 bp Feature: domain Description: argC Location: 13 902-1493 7 bp Feature: gene Location: 15028-15375 bp Feature: domain Description: PRK13623 Location: 15046-15373 bp Feature: domain Description: PRK13 623 Location: 15046-153 73 bp Feature: gene Location: 15430-15627 bp Feature: domain Description: YacG Location: 15454-15607 bp Feature: domain Description: YacG Location: 15454-15607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, MutS_I (pfam01624), argC (TIGR01850), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional), YacG (pfam03884)