myRT

myRT report for GCA_002361025.1_ASM236102v1

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Seq: DERQ01000004.1 TPA_asm: Pseudomonas oryzihabitans isolate UBA3336 UBA3336_contig_11, whole genome shotgun sequence (556747 bp)
Overview 1 RT 1: 23796-29324 bp 2 RT 2: 134304-141475 bp Neighborhood of RT #1 [23796, 29338] YbbN RVT-GII YkfC HNH Nnt1 YbaY Neighborhood of RT #2 [134304, 141477] PRK08057 Precorrin-6Y-methylase CobL RVT-GII GIIM HNHc CobG cobH Feature: gene Location: 23796-24245 bp Feature: gene Location: 24371-25240 bp Feature: domain Description: YbbN Location: 24377-25238 bp Feature: domain Description: YbbN Location: 24377-25238 bp Feature: gene Location: 25389-26726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25392-25995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25392-25995 bp Feature: domain Description: YkfC Location: 26148-26538 bp Feature: domain Description: YkfC Location: 261 48-26538 bp Feature: domain Description: HNH Note: nucleases Location: 26553-26691 bp Feature: domain Description: HNH Note: nucleases Location: 26553-26691 bp Feature: gene Location: 28230-28877 bp Feature: domain Description: Nnt1 Location: 28305-28833 bp Feature: domain Description: Nnt1 Location: 28305-28833 bp Feature: gene Location: 28874-29338 bp Feature: domain Description: YbaY Location: 28901-29324 bp Feature: domain Description: YbaY Location: 28901 -29324 bp Feature: gene Location: 134304-135026 bp Feature: domain Description: PRK08057 Location: 134307-135018 bp Feature: domain Description: PRK08057 Location: 1 34307-1 3501 8 bp Feature: gene Location: 135338-136540 bp Feature: domain Description: Precorrin-6Y-methylase Location: 135353-135950 bp Feature: domain Description: Precorrin-6Y-methylase Location: 1 35353-1 35950 bp Feature: domain Description: CobL Location: 135989-136535 bp Feature: domain Description: CobL Location: 1 35989-1 36535 bp Feature: gene Location: 136725-138062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136728-137331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36728-1 37331 bp Feature: domain Description: GIIM Note: maturase Location: 137406-137637 bp Feature: domain Description: GIIM Note: maturase Location: 1 37406-1 37637 bp Feature: domain Description: HNHc Note: nucleases Location: 137856-138021 bp Feature: domain Description: HNHc Note: nucleases Location: 1 37856-1 38021 bp Feature: gene Location: 139572-140858 bp Feature: domain Description: CobG Location: 139608-140742 bp Feature: domain Description: CobG Location: 1 39608-1 40742 bp Feature: gene Location: 140851-141477 bp Feature: domain Description: cobH Location: 140854-141475 bp Feature: domain Description: cobH Location: 1 40854-1 41 475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbbN (COG3118), RVT-GII, YkfC (COG3344), HNH (pfam01844), Nnt1 (COG3897), YbaY (COG3126), PRK08057 (cobalt-precorrin-6x reductase; Reviewed), Precorrin-6Y-methylase, CobL (COG2242), GIIM (pfam08388)
HNHc (smart00507), CobG (TIGR02435), cobH (PRK08285)

Seq: DERQ01000009.1 TPA_asm: Pseudomonas oryzihabitans isolate UBA3336 UBA3336_contig_2, whole genome shotgun sequence (631732 bp)
Overview 1 RT 1: 556122-563319 bp Neighborhood of RT #1 [556122, 563324] dnaG RpsU RVT_N RVT-GII GIIM HNH PRK09604 PRK00220 Feature: gene Location: 556122-558029 bp Feature: domain Description: dnaG Location: 556131-557985 bp Feature: domain Description: dnaG Location: 556131-557985 bp Feature: gene Location: 558343-558558 bp Feature: domain Description: RpsU Location: 558346-558544 bp Feature: domain Description: RpsU Location: 558346-558544 bp Feature: gene Location: 558726-560414 bp Feature: RT Description: RVT_N Location: 558783-559026 bp Feature: RT Description: RVT_N Location: 558783-55902 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559071-559707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559071-559707 bp Feature: domain Description: GIIM Note: maturase Location: 559761-559992 bp Feature: domain Description: GIIM Note: maturase Location: 559761-559992 bp Feature: domain Description: HNH Note: nucleases Location: 560244-560382 bp Feature: domain Description: HNH Note: nucleases Location: 5602 44-560382 bp Feature: gene Location: 561402-562604 bp Feature: domain Description: PRK09604 Location: 561582-562596 bp Feature: domain Description: PRK09604 Location: 561582 -562 596 bp Feature: gene Location: 562650-563324 bp Feature: domain Description: PRK00220 Location: 562758-563319 bp Feature: domain Description: PRK002 2 0 Location: 562 758-563319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RpsU (COG0828), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD), PRK00220 (glycerol-3-phosphate 1-O-acyltransferase PlsY)