myRT

myRT report for GCA_002361175.1_ASM236117v1

Download annotations/find similar RTs

Seq: DESG01000165.1 TPA_asm: Lachnoclostridium sp. UBA3320 UBA3320_contig_11854, whole genome shotgun sequence (3272 bp)
Overview 1 RT 1: 41-2620 bp Neighborhood of RT #1 [41, 2802] PRK09369 RVT-GII GIIM Feature: gene Location: 41-1288 bp Feature: domain Description: PRK09369 Location: 44-1280 bp Feature: domain Description: PRK09369 Location: 44-1 280 bp Feature: gene Location: 1465-2802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738-2356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 738-2356 bp Feature: domain Description: GIIM Note: maturase Location: 2413-2620 bp Feature: domain Description: GIIM Note: maturase Location: 241 3-2620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09369 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated), RVT-GII, GIIM (pfam08388)

Seq: DESG01000163.1 TPA_asm: Lachnoclostridium sp. UBA3320 UBA3320_contig_31458, whole genome shotgun sequence (3778 bp)
Overview 1 RT 1: 134-3775 bp Neighborhood of RT #1 [134, 3775] AmpC RVT-UG17 SLATT_5 Feature: gene Location: 134-772 bp Feature: domain Description: AmpC Location: 137-413 bp Feature: domain Description: AmpC Location: 137-413 bp Feature: gene Location: 872-1099 bp Feature: gene Location: 1587-2849 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1767-2352 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1767-2 352 bp Feature: gene Location: 2898-3458 bp Feature: domain Description: SLATT_5 Location: 2913-3441 bp Feature: domain Description: SLATT_5 Location: 2 913-3441 bp Feature: gene Location: 3647-3775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmpC (COG1680), RVT-UG17, SLATT_5 (pfam18160)

Seq: DESG01000080.1 TPA_asm: Lachnoclostridium sp. UBA3320 UBA3320_contig_3812, whole genome shotgun sequence (35515 bp)
Overview 1 RT 1: 33087-35469 bp Neighborhood of RT #1 [33087, 35469] RVT-GII GIIM Feature: gene Location: 33087-33242 bp Feature: gene Location: 33279-33422 bp Feature: gene Location: 33638-34879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33842-34499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 842-3 4499 bp Feature: domain Description: GIIM Note: maturase Location: 34580-34799 bp Feature: domain Description: GIIM Note: maturase Location: 3 4580-3 4799 bp Feature: gene Location: 35293-35469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DESG01000143.1 TPA_asm: Lachnoclostridium sp. UBA3320 UBA3320_contig_3990, whole genome shotgun sequence (50232 bp)
Overview 1 RT 1: 42214-49314 bp Neighborhood of RT #1 [42214, 49314] SWIM RVT-Retrons Feature: gene Location: 42214-45000 bp Feature: gene Location: 44997-46754 bp Feature: domain Description: SWIM Location: 46578-46674 bp Feature: domain Description: SWIM Location: 4 6578-4 6674 bp Feature: gene Location: 46793-48223 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47366-47990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 7366-4 7990 bp Feature: gene Location: 48424-48744 bp Feature: gene Location: 48904-49314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons

Seq: DESG01000017.1 TPA_asm: Lachnoclostridium sp. UBA3320 UBA3320_contig_8102, whole genome shotgun sequence (19892 bp)
Overview 1 RT 1: 75-4676 bp Neighborhood of RT #1 [75, 4744] RVT-GII Phage_int_SAM_3 INT_ICEBs1_C_like Feature: gene Location: 75-269 bp Feature: gene Location: 818-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983-1601 bp Feature: gene Location: 3017-3343 bp Feature: gene Location: 3521-4744 bp Feature: domain Description: Phage_int_SAM_3 Location: 3722-3893 bp Feature: domain Description: Phage_int_SAM_3 Location: 3722-3893 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4055-4676 bp Feature: domain Description: INT_ICEBs1_C_like Location: 405 5 -4676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)