myRT

myRT report for GCA_002361335.1_ASM236133v1

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Seq: DESS01000018.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_109, whole genome shotgun sequence (15050 bp)
Overview 1 RT 1: 4998-9312 bp Neighborhood of RT #1 [4998, 9530] RVT-DGRs YfmG CHAT Feature: gene Location: 4998-5372 bp Feature: gene Location: 5454-5672 bp Feature: gene Location: 5773-6861 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5983-6625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5983-6625 bp Feature: gene Location: 7297-8574 bp Feature: domain Description: YfmG Location: 7738-8542 bp Feature: domain Description: YfmG Location: 7738-8542 bp Feature: gene Location: 8640-9530 bp Feature: domain Description: CHAT Location: 9000-9312 bp Feature: domain Description: CHAT Location: 9000-931 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YfmG (COG1262), CHAT (pfam12770)

Seq: DESS01000286.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_1200, whole genome shotgun sequence (32714 bp)
Overview 1 RT 1: 181-2715 bp 2 RT 2: 17174-23261 bp Neighborhood of RT #1 [181, 2715] RVT-GII GIIM McrA RVT_N Neighborhood of RT #2 [17174, 23261] PsaA CooC RVT_N RVT-GII GIIM McrA Feature: gene Location: 181-1644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 38-937 bp Feature: domain Description: GIIM Note: maturase Location: 1042-1270 bp Feature: domain Description: GIIM Note: maturase Location: 1042 -12 70 bp Feature: domain Description: McrA Location: 1363-1624 bp Feature: domain Description: McrA Location: 1363-162 4 bp Feature: gene Location: 1674-1961 bp Feature: RT Description: RVT_N Location: 1764-1956 bp Feature: RT Description: RVT_N Location: 1764-1956 bp Feature: gene Location: 2467-2715 bp Feature: gene Location: 17174-18166 bp Feature: domain Description: PsaA Location: 17300-18137 bp Feature: domain Description: PsaA Location: 17300-18137 bp Feature: gene Location: 18257-19228 bp Feature: domain Description: CooC Location: 18323-19043 bp Feature: domain Description: CooC Location: 1832 3-19043 bp Feature: gene Location: 19509-21302 bp Feature: RT Description: RVT_N Location: 19530-19725 bp Feature: RT Description: RVT_N Location: 19530-1972 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19767-20466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19767-2 0466 bp Feature: domain Description: GIIM Note: maturase Location: 20568-20799 bp Feature: domain Description: GIIM Note: maturase Location: 2 0568-2 0799 bp Feature: domain Description: McrA Location: 20910-21189 bp Feature: domain Description: McrA Location: 2 0910-2 1189 bp Feature: gene Location: 21568-21768 bp Feature: gene Location: 21990-23261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PsaA (cd01137), CooC (COG3640)

Seq: DESS01000288.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_1202, whole genome shotgun sequence (59569 bp)
Overview 1 RT 1: 56133-59428 bp Neighborhood of RT #1 [56133, 59454] RVT_N RVT-GII RVT-GII YkfC HNHc Feature: gene Location: 56133-56345 bp Feature: gene Location: 56884-57186 bp Feature: gene Location: 57414-58121 bp Feature: RT Description: RVT_N Location: 57417-57525 bp Feature: RT Description: RVT_N Location: 57417-57525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57573-57999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57573 -57999 bp Feature: gene Location: 58159-59454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58162-58759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58162-58759 bp Feature: domain Description: YkfC Location: 58927-59059 bp Feature: domain Description: YkfC Location: 58927-59059 bp Feature: domain Description: HNHc Note: nucleases Location: 59260-59428 bp Feature: domain Description: HNHc Note: nucleases Location: 59260-59428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DESS01000070.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_1210, whole genome shotgun sequence (24998 bp)
Overview 1 RT 1: 14822-20505 bp Neighborhood of RT #1 [14822, 20505] COG3670 RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 14822-14968 bp Feature: gene Location: 15267-16712 bp Feature: domain Description: COG3670 Location: 15273-16707 bp Feature: domain Description: COG3670 Location: 15273-16707 bp Feature: gene Location: 18075-18683 bp Feature: RT Description: RVT_N Location: 18111-18348 bp Feature: RT Description: RVT_N Location: 18111-1834 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18408-18648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 08-1864 8 bp Feature: gene Location: 18698-19678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18704-19091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18704 -19091 bp Feature: domain Description: McrA Location: 19322-19649 bp Feature: domain Description: McrA Location: 19322-1964 9 bp Feature: gene Location: 19794-19928 bp Feature: gene Location: 19903-20505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3670 (Carotenoid cleavage dioxygenase or a related enzyme ), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: DESS01000047.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_138, whole genome shotgun sequence (23086 bp)
Overview 1 RT 1: 7543-13118 bp Neighborhood of RT #1 [7543, 13118] PPOX_FMN_cyano RNR_II_monomer RVT_N RVT-GII GIIM RNR_II_monomer Hint LAGLIDADG_3 RNR_II_monomer Feature: gene Location: 7543-8232 bp Feature: domain Description: PPOX_FMN_cyano Location: 7660-8230 bp Feature: domain Description: PPOX_FMN_cyano Location: 7660-8230 bp Feature: gene Location: 8298-8564 bp Feature: domain Description: RNR_II_monomer Location: 8361-8559 bp Feature: domain Description: RNR_II_monomer Location: 8361-85 5 9 bp Feature: gene Location: 9200-10759 bp Feature: RT Description: RVT_N Location: 9242-9488 bp Feature: RT Description: RVT_N Location: 9242-9488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9530-10202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 30-10202 bp Feature: domain Description: GIIM Note: maturase Location: 10304-10538 bp Feature: domain Description: GIIM Note: maturase Location: 10304-105 38 bp Feature: gene Location: 10853-12919 bp Feature: domain Description: RNR_II_monomer Location: 10856-11336 bp Feature: domain Description: RNR_II_monomer Location: 1085 6-11336 bp Feature: domain Description: Hint Location: 11336-11759 bp Feature: domain Description: Hint Location: 11336-1175 9 bp Feature: domain Description: LAGLIDADG_3 Location: 11942-12104 bp Feature: domain Description: LAGLIDADG_3 Location: 11942-12104 bp Feature: domain Description: RNR_II_monomer Location: 12506-12914 bp Feature: domain Description: RNR_II_monomer Location: 125 06-12914 bp Feature: gene Location: 12930-13118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), Hint (pfam01079), LAGLIDADG_3 (pfam14528), PPOX_FMN_cyano (TIGR04026), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DESS01000193.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_167, whole genome shotgun sequence (57177 bp)
Overview 1 RT 1: 17358-21010 bp Neighborhood of RT #1 [17358, 21010] tspaseT_teng_C RVT_N RVT-GII GIIM Feature: gene Location: 17358-17552 bp Feature: domain Description: tspaseT_teng_C Location: 17370-17490 bp Feature: domain Description: tspaseT_teng_C Location: 17370-17490 bp Feature: gene Location: 17729-17869 bp Feature: gene Location: 18324-19580 bp Feature: RT Description: RVT_N Location: 18345-18537 bp Feature: RT Description: RVT_N Location: 18345-18537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18588-19254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18588-19254 bp Feature: domain Description: GIIM Note: maturase Location: 19320-19524 bp Feature: domain Description: GIIM Note: maturase Location: 19320-19524 bp Feature: gene Location: 19697-19969 bp Feature: gene Location: 20246-21010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tspaseT_teng_C (TIGR01766), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DESS01000231.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_1770, whole genome shotgun sequence (15217 bp)
Overview 1 RT 1: 244-5891 bp Neighborhood of RT #1 [244, 5965] RVT_N RVT-GII GIIM McrA TauD TPR RimK TPR Feature: gene Location: 244-402 bp Feature: gene Location: 598-837 bp Feature: RT Description: RVT_N Location: 637-823 bp Feature: RT Description: RVT_N Location: 637 -823 bp Feature: gene Location: 827-2359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926-1601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926-1601 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1937 bp Feature: domain Description: GIIM Note: maturase Location: 17 03-1937 bp Feature: domain Description: McrA Location: 2024-2297 bp Feature: domain Description: McrA Location: 2024-2297 bp Feature: gene Location: 2706-4895 bp Feature: domain Description: TauD Location: 2793-3498 bp Feature: domain Description: TauD Location: 27 93-3498 bp Feature: domain Description: TPR Location: 3558-3831 bp Feature: domain Description: TPR Location: 3558-3831 bp Feature: domain Description: RimK Location: 4224-4524 bp Feature: domain Description: RimK Location: 4224-4524 bp Feature: gene Location: 5507-5965 bp Feature: domain Description: TPR Location: 5615-5891 bp Feature: domain Description: TPR Location: 5615-5891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauD (pfam02668), TPR (smart00028), RimK (pfam08443), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DESS01000402.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_1835, whole genome shotgun sequence (26590 bp)
Overview 1 RT 1: 13638-18830 bp Neighborhood of RT #1 [13638, 18844] ArsA_ATPase ArsA_HSP20 PRK05643 RVT_N RVT-GII GIIM McrA beta_clamp Feature: gene Location: 13638-14825 bp Feature: domain Description: ArsA_ATPase Location: 13641-14559 bp Feature: domain Description: ArsA_ATPase Location: 13641-14559 bp Feature: domain Description: ArsA_HSP20 Location: 14622-14805 bp Feature: domain Description: ArsA_HSP20 Location: 14622-148 05 bp Feature: gene Location: 15180-15686 bp Feature: domain Description: PRK05643 Location: 15201-15678 bp Feature: domain Description: PRK05643 Location: 15201-15678 bp Feature: gene Location: 15871-17649 bp Feature: RT Description: RVT_N Location: 15958-16204 bp Feature: RT Description: RVT_N Location: 15958 -16204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16246-16942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16246-16942 bp Feature: domain Description: GIIM Note: maturase Location: 17020-17254 bp Feature: domain Description: GIIM Note: maturase Location: 17020-17254 bp Feature: domain Description: McrA Location: 17347-17641 bp Feature: domain Description: McrA Location: 17347-17641 bp Feature: gene Location: 17687-17878 bp Feature: gene Location: 18263-18844 bp Feature: domain Description: beta_clamp Location: 18266-18830 bp Feature: domain Description: beta_clamp Location: 18 266-18 8 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArsA_ATPase (pfam02374), ArsA_HSP20 (pfam17886), PRK05643 (DNA polymerase III subunit beta; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), beta_clamp (cl29549)

Seq: DESS01000026.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_189, whole genome shotgun sequence (88712 bp)
Overview 1 RT 1: 3819-8463 bp Neighborhood of RT #1 [3819, 8489] YdcF COG5626 RVT_N RVT-GII GIIM McrA COG5626 PerM Feature: gene Location: 3819-4559 bp Feature: domain Description: YdcF Location: 4080-4446 bp Feature: domain Description: YdcF Location: 4080-4446 bp Feature: gene Location: 4760-4909 bp Feature: domain Description: COG5626 Location: 4781-4904 bp Feature: domain Description: COG5626 Location: 4781-49 04 bp Feature: gene Location: 4968-6545 bp Feature: RT Description: RVT_N Location: 5004-5241 bp Feature: RT Description: RVT_N Location: 5004-5241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301-5958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5301-59 58 bp Feature: domain Description: GIIM Note: maturase Location: 6015-6156 bp Feature: domain Description: GIIM Note: maturase Location: 6015-6156 bp Feature: domain Description: McrA Location: 6192-6516 bp Feature: domain Description: McrA Location: 619 2-6516 bp Feature: gene Location: 7083-7298 bp Feature: domain Description: COG5626 Location: 7098-7269 bp Feature: domain Description: COG5626 Location: 709 8-7269 bp Feature: gene Location: 7452-8489 bp Feature: domain Description: PerM Location: 7494-8463 bp Feature: domain Description: PerM Location: 749 4-8463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF (COG1434), COG5626 (Uncharacterized protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PerM (COG0628)

Seq: DESS01000366.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_217, whole genome shotgun sequence (79004 bp)
Overview 1 RT 1: 71996-78846 bp Neighborhood of RT #1 [71996, 78866] RVT_N RVT-GII McrA RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 71996-72145 bp Feature: gene Location: 72665-72856 bp Feature: gene Location: 73520-75097 bp Feature: RT Description: RVT_N Location: 73556-73793 bp Feature: RT Description: RVT_N Location: 73556-73793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73853-74510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73853-74510 bp Feature: domain Description: McrA Location: 74744-75065 bp Feature: domain Description: McrA Location: 74744-75065 bp Feature: gene Location: 75192-75635 bp Feature: gene Location: 76014-76145 bp Feature: gene Location: 76157-76378 bp Feature: RT Description: RVT_N Location: 76193-76376 bp Feature: RT Description: RVT_N Location: 76193-76376 bp Feature: gene Location: 76998-77234 bp Feature: gene Location: 77422-77883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77521-77854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77521-77854 bp Feature: gene Location: 78093-78866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78096-78177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78096-78177 bp Feature: domain Description: GIIM Note: maturase Location: 78237-78462 bp Feature: domain Description: GIIM Note: maturase Location: 78237-78462 bp Feature: domain Description: HNHc Note: nucleases Location: 78684-78846 bp Feature: domain Description: HNHc Note: nucleases Location: 78684-78846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), GIIM (pfam08388), HNHc (smart00507)

Seq: DESS01000168.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_230, whole genome shotgun sequence (17478 bp)
Overview 1 RT 1: 164-4146 bp Neighborhood of RT #1 [164, 4268] Tmk RVT_N RVT-GII GIIM HNH KOG0910 HTH_20 Feature: gene Location: 164-730 bp Feature: domain Description: Tmk Location: 170-710 bp Feature: domain Description: Tmk Location: 170-710 bp Feature: gene Location: 823-2571 bp Feature: RT Description: RVT_N Location: 859-1102 bp Feature: RT Description: RVT_N Location: 859-11 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 47-1843 bp Feature: domain Description: GIIM Note: maturase Location: 1921-2155 bp Feature: domain Description: GIIM Note: maturase Location: 1921-2155 bp Feature: domain Description: HNH Note: nucleases Location: 2377-2512 bp Feature: domain Description: HNH Note: nucleases Location: 2377-2512 bp Feature: gene Location: 3522-3845 bp Feature: domain Description: KOG0910 Location: 3531-3843 bp Feature: domain Description: KOG0910 Location: 3531-3843 bp Feature: gene Location: 3930-4268 bp Feature: domain Description: HTH_20 Location: 3981-4146 bp Feature: domain Description: HTH_20 Location: 3981-4146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0910 (KOG0910, Thioredoxin-like protein ), HTH_20 (pfam12840), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: DESS01000295.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_245, whole genome shotgun sequence (89952 bp)
Overview 1 RT 1: 41307-47153 bp Neighborhood of RT #1 [41307, 47153] GsiA RVT_N RVT-GII Ssb Feature: gene Location: 41307-41600 bp Feature: gene Location: 42610-44478 bp Feature: domain Description: GsiA Location: 42619-44440 bp Feature: domain Description: GsiA Location: 42619-44440 bp Feature: gene Location: 44876-45385 bp Feature: RT Description: RVT_N Location: 44900-45092 bp Feature: RT Description: RVT_N Location: 44900-45092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45134-45362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45134-45362 bp Feature: gene Location: 45986-46624 bp Feature: domain Description: Ssb Location: 45989-46520 bp Feature: domain Description: Ssb Location: 45989-46520 bp Feature: gene Location: 47004-47153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GsiA (COG1123), RVT_N (pfam13655), RVT-GII, Ssb (COG0629)

Seq: DESS01000135.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_282, whole genome shotgun sequence (32096 bp)
Overview 1 RT 1: 28470-31939 bp Neighborhood of RT #1 [28470, 32043] RVT_N RVT-GII YkfC McrA Feature: gene Location: 28470-29666 bp Feature: gene Location: 29810-30019 bp Feature: gene Location: 30247-32043 bp Feature: RT Description: RVT_N Location: 30283-30529 bp Feature: RT Description: RVT_N Location: 30283-30529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30571-31267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30571-31267 bp Feature: domain Description: YkfC Location: 31411-31597 bp Feature: domain Description: YkfC Location: 31411-31597 bp Feature: domain Description: McrA Location: 31654-31939 bp Feature: domain Description: McrA Location: 31654-31939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058)

Seq: DESS01000136.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_283, whole genome shotgun sequence (34165 bp)
Overview 1 RT 1: 28837-34163 bp Neighborhood of RT #1 [28837, 34163] MPP_PhoD MPP_PhoD RVT_N RVT-GII RVT-GII Feature: gene Location: 28837-31326 bp Feature: domain Description: MPP_PhoD Location: 29245-29398 bp Feature: domain Description: MPP_PhoD Location: 29245-29398 bp Feature: domain Description: MPP_PhoD Location: 29779-30658 bp Feature: domain Description: MPP_PhoD Location: 29779-30658 bp Feature: gene Location: 31483-31635 bp Feature: gene Location: 32836-33852 bp Feature: RT Description: RVT_N Location: 32875-33109 bp Feature: RT Description: RVT_N Location: 32875-33109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33169-33598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33169-33598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33604-33769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33604-33769 bp Feature: gene Location: 34002-34163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_PhoD (cd07389), RVT_N (pfam13655), RVT-GII

Seq: DESS01000260.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_290, whole genome shotgun sequence (86054 bp)
Overview 1 RT 1: 42464-50537 bp Neighborhood of RT #1 [42464, 50537] PMT_2 RVT_N RVT-GII GIIM Feature: gene Location: 42464-44077 bp Feature: domain Description: PMT_2 Location: 42668-43070 bp Feature: domain Description: PMT_2 Location: 42668-43070 bp Feature: gene Location: 44652-44819 bp Feature: gene Location: 44916-46196 bp Feature: RT Description: RVT_N Location: 44952-45186 bp Feature: RT Description: RVT_N Location: 44952-45186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45249-45840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45249-45840 bp Feature: domain Description: GIIM Note: maturase Location: 45897-46068 bp Feature: domain Description: GIIM Note: maturase Location: 45897-46068 bp Feature: gene Location: 47012-49861 bp Feature: gene Location: 50292-50537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PMT_2 (pfam13231), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DESS01000185.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_3056, whole genome shotgun sequence (11619 bp)
Overview 1 RT 1: 106-7341 bp Neighborhood of RT #1 [106, 7358] STKc_PknB_like YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 106-1992 bp Feature: domain Description: STKc_PknB_like Location: 277-1078 bp Feature: domain Description: STKc_PknB_like Location: 277-1078 bp Feature: domain Description: YfmG Location: 1186-1987 bp Feature: domain Description: YfmG Location: 1186-1987 bp Feature: gene Location: 3053-4174 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3257-3905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3257-3905 bp Feature: gene Location: 4171-4710 bp Feature: domain Description: Avd_like Location: 4363-4669 bp Feature: domain Description: Avd_like Location: 4363-4669 bp Feature: gene Location: 4833-7358 bp Feature: domain Description: YfmG Location: 6591-7341 bp Feature: domain Description: YfmG Location: 6591-7341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: DESS01000179.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_3241, whole genome shotgun sequence (25355 bp)
Overview 1 RT 1: 17037-22234 bp Neighborhood of RT #1 [17037, 22234] recomb_XerD INT_tnpA_C_Tn554 RVT_N RVT-GII GIIM McrA Feature: gene Location: 17037-17735 bp Feature: gene Location: 17762-18529 bp Feature: domain Description: recomb_XerD Location: 17852-18137 bp Feature: domain Description: recomb_XerD Location: 17 852-18137 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 18272-18512 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 18272-18512 bp Feature: gene Location: 19549-21300 bp Feature: RT Description: RVT_N Location: 19579-19771 bp Feature: RT Description: RVT_N Location: 19579-19771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19816-20509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19816-20509 bp Feature: domain Description: GIIM Note: maturase Location: 20635-20860 bp Feature: domain Description: GIIM Note: maturase Location: 20635-20860 bp Feature: domain Description: McrA Location: 20953-21214 bp Feature: domain Description: McrA Location: 20953-21214 bp Feature: gene Location: 21331-21528 bp Feature: gene Location: 21725-22234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerD (TIGR02225), INT_tnpA_C_Tn554 (cd01186), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DESS01000094.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_4302, whole genome shotgun sequence (11369 bp)
Overview 1 RT 1: 11-4328 bp Neighborhood of RT #1 [11, 4348] InsQ RVT_N RVT-GII GIIM HNH tspaseT_teng_C COG2452 Feature: gene Location: 11-274 bp Feature: domain Description: InsQ Location: 134-266 bp Feature: domain Description: InsQ Location: 134-266 bp Feature: gene Location: 307-753 bp Feature: gene Location: 808-2550 bp Feature: RT Description: RVT_N Location: 838-1084 bp Feature: RT Description: RVT_N Location: 838-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126-1807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126-18 07 bp Feature: domain Description: GIIM Note: maturase Location: 1909-2140 bp Feature: domain Description: GIIM Note: maturase Location: 1909-2140 bp Feature: domain Description: HNH Note: nucleases Location: 2365-2500 bp Feature: domain Description: HNH Note: nucleases Location: 2365-2500 bp Feature: gene Location: 2979-3746 bp Feature: domain Description: tspaseT_teng_C Location: 3273-3513 bp Feature: domain Description: tspaseT_teng_C Location: 3273-3513 bp Feature: gene Location: 3743-4348 bp Feature: domain Description: COG2452 Location: 3755-4328 bp Feature: domain Description: COG2452 Location: 3755-4328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tspaseT_teng_C (TIGR01766), COG2452 (Predicted site-specific integrase-resolvase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: DESS01000009.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_445, whole genome shotgun sequence (36382 bp)
Overview 1 RT 1: 17782-26075 bp Neighborhood of RT #1 [17782, 26077] argS DALR_1 Cof RVT_N RVT-GII GIIM McrA PRK05755 Feature: gene Location: 17782-18642 bp Feature: domain Description: argS Location: 17869-18154 bp Feature: domain Description: argS Location: 17869-18154 bp Feature: domain Description: DALR_1 Location: 18244-18634 bp Feature: domain Description: DALR_1 Location: 18244-18634 bp Feature: gene Location: 18909-19607 bp Feature: domain Description: Cof Location: 18915-19605 bp Feature: domain Description: Cof Location: 18915-19 605 bp Feature: gene Location: 19790-21478 bp Feature: RT Description: RVT_N Location: 19823-20066 bp Feature: RT Description: RVT_N Location: 19 823-20066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20111-20789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20111-20789 bp Feature: domain Description: GIIM Note: maturase Location: 20888-21119 bp Feature: domain Description: GIIM Note: maturase Location: 20888-21119 bp Feature: domain Description: McrA Location: 21212-21473 bp Feature: domain Description: McrA Location: 21212-21473 bp Feature: gene Location: 22372-22563 bp Feature: gene Location: 23174-26077 bp Feature: domain Description: PRK05755 Location: 23207-26075 bp Feature: domain Description: PRK05755 Location: 23207-26075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argS (TIGR00456), DALR_1 (smart00836), Cof (COG0561), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK05755 (DNA polymerase I; Provisional)

Seq: DESS01000270.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_6084, whole genome shotgun sequence (9923 bp)
Overview 1 RT 1: 1000-5207 bp Neighborhood of RT #1 [1000, 5207] Ribonuc_L-PSP RVT_N RVT-GII GIIM STKc_PknB_like Feature: gene Location: 1000-1428 bp Feature: domain Description: Ribonuc_L-PSP Location: 1063-1402 bp Feature: domain Description: Ribonuc_L-PSP Location: 1063-1402 bp Feature: gene Location: 1542-3002 bp Feature: RT Description: RVT_N Location: 1551-1797 bp Feature: RT Description: RVT_N Location: 1551-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839-2511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1839-2511 bp Feature: domain Description: GIIM Note: maturase Location: 2595-2823 bp Feature: domain Description: GIIM Note: maturase Location: 2595-2823 bp Feature: gene Location: 3041-4858 bp Feature: domain Description: STKc_PknB_like Location: 3083-3866 bp Feature: domain Description: STKc_PknB_like Location: 3083-3866 bp Feature: gene Location: 5055-5207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ribonuc_L-PSP (pfam01042), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), STKc_PknB_like (cd14014)

Seq: DESS01000277.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_6953, whole genome shotgun sequence (7538 bp)
Overview 1 RT 1: 3699-7537 bp Neighborhood of RT #1 [3699, 7536] Rubredoxin_2 Rubredoxin_2 Rubredoxin_2 RVT_N RVT-GII GIIM McrA RVT_N RVT-GII Feature: gene Location: 3699-3896 bp Feature: gene Location: 4027-4200 bp Feature: domain Description: Rubredoxin_2 Location: 4102-4123 bp Feature: domain Description: Rubredoxin_2 Location: 4102-4123 bp Feature: domain Description: Rubredoxin_2 Location: 4123-4153 bp Feature: domain Description: Rubredoxin_2 Location: 4123-4153 bp Feature: domain Description: Rubredoxin_2 Location: 4159-4180 bp Feature: domain Description: Rubredoxin_2 Location: 4159-4180 bp Feature: gene Location: 4793-6580 bp Feature: RT Description: RVT_N Location: 4865-5111 bp Feature: RT Description: RVT_N Location: 4865-5111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5153-5846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5153-5846 bp Feature: domain Description: GIIM Note: maturase Location: 5945-6179 bp Feature: domain Description: GIIM Note: maturase Location: 5945-6179 bp Feature: domain Description: McrA Location: 6230-6536 bp Feature: domain Description: McrA Location: 6230-6536 bp Feature: gene Location: 7222-7536 bp Feature: RT Description: RVT_N Location: 7225-7357 bp Feature: RT Description: RVT_N Location: 7225-7357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7399-7537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7399-7537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rubredoxin_2 (pfam18073), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DESS01000373.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_820, whole genome shotgun sequence (5043 bp)
Overview 1 RT 1: 1373-4574 bp Neighborhood of RT #1 [1373, 4603] LptB LptA RVT_N RVT-GII GIIM McrA Feature: gene Location: 1373-2101 bp Feature: domain Description: LptB Location: 1379-2099 bp Feature: domain Description: LptB Location: 1379-2099 bp Feature: gene Location: 2133-2621 bp Feature: domain Description: LptA Location: 2229-2574 bp Feature: domain Description: LptA Location: 22 29-2574 bp Feature: gene Location: 3080-4603 bp Feature: RT Description: RVT_N Location: 3131-3365 bp Feature: RT Description: RVT_N Location: 3131-3365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3425-4019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3425-4019 bp Feature: domain Description: GIIM Note: maturase Location: 4076-4199 bp Feature: domain Description: GIIM Note: maturase Location: 4076-4199 bp Feature: domain Description: McrA Location: 4292-4574 bp Feature: domain Description: McrA Location: 4292-4574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptB (COG1137), LptA (COG1934), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DESS01000144.1 TPA_asm: Richelia sp. UBA3308 UBA3308_contig_90, whole genome shotgun sequence (107143 bp)
Overview 1 RT 1: 325-11312 bp Neighborhood of RT #1 [325, 11312] RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM McrA STKc_PknB_like COG3899 GAF BaeS Feature: gene Location: 325-456 bp Feature: gene Location: 983-2575 bp Feature: RT Description: RVT_N Location: 1016-1223 bp Feature: RT Description: RVT_N Location: 1016-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1265-1904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1265-1904 bp Feature: domain Description: GIIM Note: maturase Location: 1991-2225 bp Feature: domain Description: GIIM Note: maturase Location: 1991-2225 bp Feature: domain Description: HNHc Note: nucleases Location: 2408-2549 bp Feature: domain Description: HNHc Note: nucleases Location: 2408-2549 bp Feature: gene Location: 3348-3590 bp Feature: RT Description: RVT_N Location: 3387-3573 bp Feature: RT Description: RVT_N Location: 3387-3573 bp Feature: gene Location: 3577-5061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3676-4351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3676-4351 bp Feature: domain Description: GIIM Note: maturase Location: 4453-4687 bp Feature: domain Description: GIIM Note: maturase Location: 4453-4687 bp Feature: domain Description: McrA Location: 4774-5050 bp Feature: domain Description: McrA Location: 4774-5050 bp Feature: gene Location: 5213-10576 bp Feature: domain Description: STKc_PknB_like Location: 5255-6035 bp Feature: domain Description: STKc_PknB_like Location: 5255-6035 bp Feature: domain Description: COG3899 Location: 6128-8666 bp Feature: domain Description: COG3899 Location: 6128-8666 bp Feature: domain Description: GAF Location: 9278-9698 bp Feature: domain Description: GAF Location: 9278-9698 bp Feature: domain Description: BaeS Location: 9698-10568 bp Feature: domain Description: BaeS Location: 9698-10568 bp Feature: gene Location: 11115-11312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HNHc (smart00507), STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), GAF (smart00065), BaeS (COG0642)