myRT

myRT report for GCA_002364035.1_ASM236403v1

Download annotations/find similar RTs

Seq: DEXH01000024.1 TPA_asm: Arsukibacterium sp. UBA3189 UBA3189_contig_13237, whole genome shotgun sequence (13785 bp)
Overview 1 RT 1: 9700-13332 bp Neighborhood of RT #1 [9700, 13358] HTH_Tnp_1 HTH_Tnp_1 HTH_32 Tra5 RVT-Retrons HTH_17 Feature: gene Location: 9700-10137 bp Feature: domain Description: HTH_Tnp_1 Location: 9706-9814 bp Feature: domain Description: HTH_Tnp_1 Location: 9706-981 4 bp Feature: domain Description: HTH_Tnp_1 Location: 9817-10042 bp Feature: domain Description: HTH_Tnp_1 Location: 981 7-1 0042 bp Feature: gene Location: 10140-11198 bp Feature: domain Description: HTH_32 Location: 10242-10464 bp Feature: domain Description: HTH_32 Location: 1 0242-1 0464 bp Feature: domain Description: Tra5 Location: 10524-11025 bp Feature: domain Description: Tra5 Location: 1 0524-1 1 025 bp Feature: gene Location: 11207-12157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11360-11906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 360-1 1 906 bp Feature: gene Location: 12367-12765 bp Feature: gene Location: 13149-13358 bp Feature: domain Description: HTH_17 Location: 13179-13332 bp Feature: domain Description: HTH_1 7 Location: 1 31 79-1 3332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801), RVT-Retrons, HTH_17 (pfam12728)

Seq: DEXH01000003.1 TPA_asm: Arsukibacterium sp. UBA3189 UBA3189_contig_27, whole genome shotgun sequence (550576 bp)
Overview 1 RT 1: 507076-511787 bp Neighborhood of RT #1 [507076, 511787] AAA_15 AAA_15 TOPRIM_OLD RVT-Retrons COG4994 Feature: gene Location: 507076-508722 bp Feature: domain Description: AAA_15 Location: 507079-507217 bp Feature: domain Description: AAA_15 Location: 507079-5072 17 bp Feature: domain Description: AAA_15 Location: 507550-508081 bp Feature: domain Description: AAA_15 Location: 507550-508081 bp Feature: domain Description: TOPRIM_OLD Location: 508234-508477 bp Feature: domain Description: TOPRIM_OLD Location: 5082 34-508477 bp Feature: gene Location: 509096-510073 bp Feature: gene Location: 510063-510995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 510162-510747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 510162 -510747 bp Feature: gene Location: 511178-511549 bp Feature: domain Description: COG4994 Location: 511190-511532 bp Feature: domain Description: COG4994 Location: 511190-511532 bp Feature: gene Location: 511569-511787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, COG4994 (Uncharacterized protein )

Seq: DEXH01000007.1 TPA_asm: Arsukibacterium sp. UBA3189 UBA3189_contig_574, whole genome shotgun sequence (340645 bp)
Overview 1 RT 1: 146276-151962 bp Neighborhood of RT #1 [146276, 151962] RMtype1_S_SonII-TRD2-CR2_like HsdS RMtype1_S_SonII-TRD2-CR2_like RVT-UG12 DUF1566 DUF1566 Feature: gene Location: 146276-148024 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 146597-147143 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 146597-147143 bp Feature: domain Description: HsdS Location: 147179-147401 bp Feature: domain Description: HsdS Location: 147179-147401 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 147446-148004 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 147446-148004 bp Feature: gene Location: 148021-148716 bp Feature: gene Location: 148723-150312 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 149119-149539 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 149119-14953 9 bp Feature: gene Location: 150449-151351 bp Feature: domain Description: DUF1566 Location: 150464-150713 bp Feature: domain Description: DUF1566 Location: 150464-150713 bp Feature: domain Description: DUF1566 Location: 150791-151127 bp Feature: domain Description: DUF1566 Location: 150791-151127 bp Feature: gene Location: 151648-151962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdS (COG0732), RVT-UG12, DUF1566 (pfam07603)