myRT

myRT report for GCA_002365745.1_ASM236574v1

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Seq: DFAY01000006.1 TPA_asm: Pseudomonas kunmingensis isolate UBA3094 UBA3094_contig_36, whole genome shotgun sequence (118756 bp)
Overview 1 RT 1: 114237-118489 bp Neighborhood of RT #1 [114237, 118506] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 114237-114572 bp Feature: domain Description: TnpB_IS66 Location: 114255-114543 bp Feature: domain Description: TnpB_IS66 Location: 1 1 4255-1 1 4543 bp Feature: gene Location: 114635-115963 bp Feature: domain Description: LZ_Tnp_IS66 Location: 114761-114974 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 4761 -1 1 4974 bp Feature: domain Description: zf-IS66 Location: 115001-115127 bp Feature: domain Description: zf-IS66 Location: 1 1 5001 -1 1 51 27 bp Feature: domain Description: DDE_Tnp_IS66 Location: 115169-115943 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 51 69-1 1 5943 bp Feature: gene Location: 116519-118192 bp Feature: RT Description: RVT_N Location: 116564-116807 bp Feature: RT Description: RVT_N Location: 1 1 6564-1 1 6807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116852-117488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6852-1 1 7488 bp Feature: domain Description: GIIM Note: maturase Location: 117542-117773 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 7542-1 1 7773 bp Feature: gene Location: 118372-118506 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 118378-118489 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 8378-1 1 8489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: DFAY01000018.1 TPA_asm: Pseudomonas kunmingensis isolate UBA3094 UBA3094_contig_4, whole genome shotgun sequence (385992 bp)
Overview 1 RT 1: 346901-355173 bp Neighborhood of RT #1 [346901, 355190] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 346901-348097 bp Feature: domain Description: PRK10770 Location: 346907-348089 bp Feature: domain Description: PRK10770 Location: 346907-348089 bp Feature: gene Location: 348189-351005 bp Feature: domain Description: LptD Location: 348558-350988 bp Feature: domain Description: LptD Location: 348558-350988 bp Feature: gene Location: 351116-352822 bp Feature: RT Description: RVT_N Location: 351173-351413 bp Feature: RT Description: RVT_N Location: 351173-351413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351461-352094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351461-352 094 bp Feature: domain Description: GIIM Note: maturase Location: 352148-352382 bp Feature: domain Description: GIIM Note: maturase Location: 352 148-352 382 bp Feature: domain Description: HNH Note: nucleases Location: 352634-352766 bp Feature: domain Description: HNH Note: nucleases Location: 352 634-352 766 bp Feature: gene Location: 352939-353094 bp Feature: gene Location: 354132-355190 bp Feature: domain Description: COG3178 Location: 354180-355173 bp Feature: domain Description: COG3178 Location: 354180-355173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )