myRT

myRT report for GCA_002367105.1_ASM236710v1

Download annotations/find similar RTs

Seq: DFCS01000049.1 TPA_asm: Hungatella sp. UBA3048 UBA3048_contig_145, whole genome shotgun sequence (203740 bp)
Overview 1 RT 1: 55846-62433 bp Neighborhood of RT #1 [55846, 62492] YesM YesN YesN RVT-Retrons SgcQ IF-2B Feature: gene Location: 55846-57651 bp Feature: domain Description: YesM Location: 56464-57604 bp Feature: domain Description: YesM Location: 56464-57604 bp Feature: gene Location: 57667-59256 bp Feature: domain Description: YesN Location: 57688-58315 bp Feature: domain Description: YesN Location: 57688-5831 5 bp Feature: domain Description: YesN Location: 58807-59236 bp Feature: domain Description: YesN Location: 58807-59236 bp Feature: gene Location: 59256-60254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59433-59988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59433-59988 bp Feature: gene Location: 60689-61480 bp Feature: domain Description: SgcQ Location: 60707-61469 bp Feature: domain Description: SgcQ Location: 60707-61 469 bp Feature: gene Location: 61506-62492 bp Feature: domain Description: IF-2B Location: 61668-62433 bp Feature: domain Description: IF-2B Location: 61 668-62433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), YesN (COG4753), RVT-Retrons, SgcQ (COG0434), IF-2B (pfam01008)

Seq: DFCS01000017.1 TPA_asm: Hungatella sp. UBA3048 UBA3048_contig_459, whole genome shotgun sequence (76515 bp)
Overview 1 RT 1: 50700-57079 bp Neighborhood of RT #1 [50700, 57123] zinc_ribbon_2 zinc_ribbon_2 RVT-GII GIIM LGT_LGT_LGT_TIGR03299 Feature: gene Location: 50700-51290 bp Feature: gene Location: 51315-53201 bp Feature: domain Description: zinc_ribbon_2 Location: 51699-51762 bp Feature: domain Description: zinc_ribbon_2 Location: 51699-51762 bp Feature: domain Description: zinc_ribbon_2 Location: 51780-51843 bp Feature: domain Description: zinc_ribbon_2 Location: 51780-51843 bp Feature: gene Location: 53650-55068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54007-54622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54007-5462 2 bp Feature: domain Description: GIIM Note: maturase Location: 54679-54901 bp Feature: domain Description: GIIM Note: maturase Location: 54679-54901 bp Feature: gene Location: 55545-55958 bp Feature: gene Location: 56191-57123 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 56209-57079 bp Feature: domain Description: LGT_LGT_LGT_TIGR032 99 Location: 562 09-57079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_2 (pfam13240), RVT-GII, GIIM (pfam08388), LGT_LGT_LGT_TIGR03299

Seq: DFCS01000012.1 TPA_asm: Hungatella sp. UBA3048 UBA3048_contig_620, whole genome shotgun sequence (211469 bp)
Overview 1 RT 1: 17-4262 bp Neighborhood of RT #1 [17, 4273] RVT-UG5 Maff2 Crp Feature: gene Location: 17-1597 bp Feature: gene Location: 1687-3144 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2164-2614 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2164-2614 bp Feature: gene Location: 3381-3539 bp Feature: domain Description: Maff2 Location: 3384-3519 bp Feature: domain Description: Maff2 Location: 3 3 84-3 519 bp Feature: gene Location: 3683-4273 bp Feature: domain Description: Crp Location: 3752-4262 bp Feature: domain Description: Crp Location: 3 752-4262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, Maff2 (pfam12750), Crp (pfam00325)