myRT

myRT report for GCA_002367955.1_ASM236795v1

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Seq: AP018166.1 Anabaena cylindrica PCC 7122 DNA, nearly complete genome (6351103 bp)
Overview 1 RT 1: 4703783-4710365 bp 2 RT 2: 6183599-6187672 bp 3 RT 3: 6334014-6349506 bp Neighborhood of RT #1 [4703783, 4710370] RVT_N RVT-GII GIIM HNHc FtsE Neighborhood of RT #2 [6183599, 6187672] RVT-GII GIIM HNHc RVT_N RVT-GII Neighborhood of RT #3 [6334014, 6349529] TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 CHAT YprA RVT-GII GIIM HNHc RVT_N RVT-GII XerD HTH_XRE DZR COG4644 DDE_Tnp_Tn3 RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 4703783-4704538 bp Feature: gene Location: 4704679-4705296 bp Feature: gene Location: 4706417-4708102 bp Ori: BAY04846.1 Feature: domain Description: RVT_N Location: 4706471-4706717 bp Feature: domain Description: RVT_N Location: 4706471 -470671 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4706765-4707416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4706765-470741 6 bp Feature: domain Description: GIIM Note: maturase Location: 4707467-4707701 bp Feature: domain Description: GIIM Note: maturase Location: 4707467-4707701 bp Feature: domain Description: HNHc Note: nucleases Location: 4707926-4708085 bp Feature: domain Description: HNHc Note: nucleases Location: 4707926-4708085 bp Feature: gene Location: 4708783-4709460 bp Feature: gene Location: 4709624-4710370 bp Ori: BAY04848.1 Feature: domain Description: FtsE Location: 4709717-4710365 bp Feature: domain Description: FtsE Location: 470971 7-471 0365 bp Feature: gene Location: 6183599-6183808 bp Feature: gene Location: 6184253-6184771 bp Feature: gene Location: 6185035-6185916 bp Ori: BAY06171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6185059-6185230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 85059-61 85230 bp Feature: domain Description: GIIM Note: maturase Location: 6185281-6185515 bp Feature: domain Description: GIIM Note: maturase Location: 61 85281 -61 8551 5 bp Feature: domain Description: HNHc Note: nucleases Location: 6185740-6185899 bp Feature: domain Description: HNHc Note: nucleases Location: 61 85740-61 85899 bp Feature: gene Location: 6185870-6186229 bp Ori: BAY06172.1 Feature: domain Description: RVT_N Location: 6185876-6186014 bp Feature: domain Description: RVT_N Location: 61 85876-61 8601 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186062-6186224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 86062-61 86224 bp Feature: gene Location: 6187116-6187484 bp Feature: gene Location: 6187571-6187672 bp Feature: gene Location: 6334014-6338168 bp Ori: BAY06321.1 Feature: domain Description: TPR_12 Location: 6334056-6334257 bp Feature: domain Description: TPR_1 2 Location: 6334056-6334257 bp Feature: domain Description: TPR_12 Location: 6334287-6334509 bp Feature: domain Description: TPR_1 2 Location: 6334287-6334509 bp Feature: domain Description: TPR_12 Location: 6334536-6334758 bp Feature: domain Description: TPR_1 2 Location: 6334536-6334758 bp Feature: domain Description: TPR_12 Location: 6334791-6335010 bp Feature: domain Description: TPR_1 2 Location: 6334791 -633501 0 bp Feature: domain Description: TPR_12 Location: 6335040-6335268 bp Feature: domain Description: TPR_1 2 Location: 6335040-6335268 bp Feature: domain Description: TPR_12 Location: 6335292-6335517 bp Feature: domain Description: TPR_1 2 Location: 6335292-633551 7 bp Feature: domain Description: TPR_12 Location: 6335547-6335769 bp Feature: domain Description: TPR_1 2 Location: 6335547-6335769 bp Feature: domain Description: TPR_12 Location: 6335796-6336018 bp Feature: domain Description: TPR_1 2 Location: 6335796-633601 8 bp Feature: domain Description: TPR_12 Location: 6336048-6336258 bp Feature: domain Description: TPR_1 2 Location: 6336048-6336258 bp Feature: domain Description: CHAT Location: 6337002-6338157 bp Feature: domain Description: CHAT Location: 6337002-63381 57 bp Feature: gene Location: 6338295-6340148 bp Ori: BAY06322.1 Feature: domain Description: YprA Location: 6338427-6340020 bp Feature: domain Description: YprA Location: 6338427-6340020 bp Feature: gene Location: 6340112-6341338 bp Ori: BAY06323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6340118-6340640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63401 1 8-6340640 bp Feature: domain Description: GIIM Note: maturase Location: 6340718-6340946 bp Feature: domain Description: GIIM Note: maturase Location: 634071 8-6340946 bp Feature: domain Description: HNHc Note: nucleases Location: 6341150-6341315 bp Feature: domain Description: HNHc Note: nucleases Location: 6341 1 50-6341 31 5 bp Feature: gene Location: 6341298-6341786 bp Ori: BAY06324.1 Feature: domain Description: RVT_N Location: 6341340-6341586 bp Feature: domain Description: RVT_N Location: 6341 340-6341 586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341634-6341748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6341 634-6341 748 bp Feature: gene Location: 6342632-6343525 bp Ori: BAY06325.1 Feature: domain Description: XerD Location: 6342674-6343499 bp Feature: domain Description: XerD Location: 6342674-6343499 bp Feature: gene Location: 6343614-6344075 bp Ori: BAY06326.1 Feature: domain Description: HTH_XRE Location: 6343674-6343839 bp Feature: domain Description: HTH_XRE Location: 6343674-6343839 bp Feature: domain Description: DZR Location: 6343893-6344049 bp Feature: domain Description: DZR Location: 6343893-6344049 bp Feature: gene Location: 6344186-6347164 bp Ori: BAY06327.1 Feature: domain Description: COG4644 Location: 6344273-6345086 bp Feature: domain Description: COG4644 Location: 6344273-6345086 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6345932-6347090 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 6345932-6347090 bp Feature: gene Location: 6347855-6348343 bp Ori: BAY06328.1 Feature: domain Description: RVT_N Location: 6347897-6348143 bp Feature: domain Description: RVT_N Location: 6347897-63481 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6348191-6348305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63481 91 -6348305 bp Feature: gene Location: 6348303-6349529 bp Ori: BAY06329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6348309-6348831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6348309-6348831 bp Feature: domain Description: GIIM Note: maturase Location: 6348909-6349137 bp Feature: domain Description: GIIM Note: maturase Location: 6348909-63491 37 bp Feature: domain Description: HNHc Note: nucleases Location: 6349341-6349506 bp Feature: domain Description: HNHc Note: nucleases Location: 6349341 -6349506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), FtsE (TIGR02673), TPR_12 (pfam13424), CHAT (pfam12770), YprA (COG1205), XerD (COG4974), HTH_XRE (smart00530)
DZR (pfam12773), COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526)

Seq: AP018167.1 Anabaena cylindrica PCC 7122 plasmid plasmid1 DNA, complete genome (259925 bp)
Overview 1 RT 1: 74-3523 bp 2 RT 2: 36307-53981 bp 3 RT 3: 206329-213463 bp Neighborhood of RT #1 [74, 3639] RVT-GII GIIM McrA Phage_integrase RHH_1 Neighborhood of RT #2 [36307, 54037] NUC1 Big_9 PKD PKD PKD PKD PKD Calx-beta RVT_N RVT-GII McrA DDE_5 couple_hipB Neighborhood of RT #3 [206329, 213495] TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_10 TPR_12 CHAT HTH_XRE DUF4384 RVT-CRISPR cas1 Feature: gene Location: 74-643 bp Feature: gene Location: 874-1944 bp Ori: BAY06331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1291-1525 bp Feature: domain Description: GIIM Note: maturase Location: 12 91-152 5 bp Feature: domain Description: McrA Location: 1564-1888 bp Feature: domain Description: McrA Location: 1564-1888 bp Feature: gene Location: 2428-3075 bp Ori: BAY06332.1 Feature: domain Description: Phage_integrase Location: 2458-2962 bp Feature: domain Description: Phage_integrase Location: 2 458-2 962 bp Feature: gene Location: 3268-3639 bp Ori: BAY06333.1 Feature: domain Description: RHH_1 Location: 3424-3523 bp Feature: domain Description: RHH_1 Location: 342 4-352 3 bp Feature: gene Location: 36307-44742 bp Ori: BAY06368.1 Feature: domain Description: NUC1 Location: 39367-40171 bp Feature: domain Description: NUC1 Location: 39367-40171 bp Feature: domain Description: Big_9 Location: 41917-42130 bp Feature: domain Description: Big_9 Location: 41917-42 130 bp Feature: domain Description: PKD Location: 42193-42421 bp Feature: domain Description: PKD Location: 42 193-42 42 1 bp Feature: domain Description: PKD Location: 42487-42679 bp Feature: domain Description: PKD Location: 42 487-42 679 bp Feature: domain Description: PKD Location: 42736-42934 bp Feature: domain Description: PKD Location: 42 736-42 934 bp Feature: domain Description: PKD Location: 42988-43177 bp Feature: domain Description: PKD Location: 42 988-43177 bp Feature: domain Description: PKD Location: 43249-43453 bp Feature: domain Description: PKD Location: 432 49-43453 bp Feature: domain Description: Calx-beta Location: 43483-43729 bp Feature: domain Description: Calx-beta Location: 43483-4372 9 bp Feature: gene Location: 45053-47623 bp Feature: gene Location: 49347-50918 bp Ori: BAY06370.1 Feature: domain Description: RVT_N Location: 49383-49629 bp Feature: domain Description: RVT_N Location: 49383-4962 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49680-50334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49680-50334 bp Feature: domain Description: McrA Location: 50565-50889 bp Feature: domain Description: McrA Location: 50565-50889 bp Feature: gene Location: 50899-52293 bp Ori: BAY06371.1 Feature: domain Description: DDE_5 Location: 50929-51730 bp Feature: domain Description: DDE_5 Location: 5092 9-51730 bp Feature: gene Location: 52439-54037 bp Ori: BAY06372.1 Feature: domain Description: couple_hipB Location: 53873-53981 bp Feature: domain Description: couple_hipB Location: 53873-53981 bp Feature: gene Location: 206329-210102 bp Ori: BAY06510.1 Feature: domain Description: TPR_12 Location: 206482-206695 bp Feature: domain Description: TPR_12 Location: 2 06482 -2 06695 bp Feature: domain Description: TPR_12 Location: 206725-206950 bp Feature: domain Description: TPR_12 Location: 2 0672 5-2 06950 bp Feature: domain Description: TPR_12 Location: 206977-207196 bp Feature: domain Description: TPR_12 Location: 2 06977-2 07196 bp Feature: domain Description: TPR_10 Location: 207235-207355 bp Feature: domain Description: TPR_10 Location: 2 072 35-2 07355 bp Feature: domain Description: TPR_12 Location: 207355-207580 bp Feature: domain Description: TPR_12 Location: 2 07355-2 07580 bp Feature: domain Description: TPR_12 Location: 207610-207802 bp Feature: domain Description: TPR_12 Location: 2 07610-2 07802 bp Feature: domain Description: TPR_10 Location: 207862-207979 bp Feature: domain Description: TPR_10 Location: 2 07862 -2 07979 bp Feature: domain Description: TPR_12 Location: 207985-208177 bp Feature: domain Description: TPR_12 Location: 2 07985-2 08177 bp Feature: domain Description: CHAT Location: 208960-210079 bp Feature: domain Description: CHAT Location: 2 08960-2 10079 bp Feature: gene Location: 210384-211151 bp Ori: BAY06511.1 Feature: domain Description: HTH_XRE Location: 210429-210588 bp Feature: domain Description: HTH_XRE Location: 2 1042 9-2 10588 bp Feature: domain Description: DUF4384 Location: 210780-211011 bp Feature: domain Description: DUF4384 Location: 2 10780-2 11011 bp Feature: gene Location: 211489-213495 bp Ori: BAY06512.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 211678-212284 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 11678-2 12 2 84 bp Feature: domain Description: cas1 Location: 212500-213463 bp Feature: domain Description: cas1 Location: 2 12 500-2 13463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), Phage_integrase (pfam00589), RHH_1 (pfam01402), NUC1 (COG1864), Big_9 (pfam17963), PKD (smart00089), Calx-beta (pfam03160), RVT_N (pfam13655)
DDE_5 (pfam13546), couple_hipB (TIGR03070), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287)