myRT

myRT report for GCA_002367995.1_ASM236799v1

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Seq: AP018209.1 Calothrix brevissima NIES-22 plasmid plasmid2 DNA, complete genome (207970 bp)
Overview 1 RT 1: 172967-178783 bp Neighborhood of RT #1 [172967, 178800] BcsQ PRK13341 RVT-GII McrA PRK13341 PRK13341 Feature: gene Location: 172967-173779 bp Feature: domain Description: BcsQ Location: 172973-173753 bp Feature: domain Description: BcsQ Location: 1 72973-1 73753 bp Feature: gene Location: 174148-174852 bp Feature: domain Description: PRK13341 Location: 174151-174811 bp Feature: domain Description: PRK1 3341 Location: 1 741 51 -1 7481 1 bp Feature: gene Location: 175652-176941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175700-176357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75700-1 76357 bp Feature: domain Description: McrA Location: 176594-176927 bp Feature: domain Description: McrA Location: 1 76594-1 76927 bp Feature: gene Location: 177480-177860 bp Feature: domain Description: PRK13341 Location: 177492-177855 bp Feature: domain Description: PRK1 3341 Location: 1 77492-1 77855 bp Feature: gene Location: 177844-178800 bp Feature: domain Description: PRK13341 Location: 177859-178783 bp Feature: domain Description: PRK1 3341 Location: 1 77859-1 78783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), PRK13341 (AAA family ATPase), RVT-GII, McrA (COG4058)

Seq: AP018207.1 Calothrix brevissima NIES-22 DNA, nearly complete genome (8527291 bp)
Overview 1 RT 1: 1949913-1956632 bp 2 RT 2: 2388483-2395179 bp 3 RT 3: 4106128-4113209 bp Neighborhood of RT #1 [1949913, 1956646] clpC RVT-Retrons PRK00724 Neighborhood of RT #2 [2388483, 2395190] PRK07399 tmk RVT_N RVT-GII GIIM HNH AA_permease_2 CitA BaeS Neighborhood of RT #3 [4106128, 4113214] MscS HD_4 RVT_N RVT-GII GIIM McrA SpoT TIGR03985 Feature: gene Location: 1949913-1952381 bp Feature: domain Description: clpC Location: 1949916-1952340 bp Feature: domain Description: clpC Location: 1949916-1952 340 bp Feature: gene Location: 1952490-1953419 bp Feature: gene Location: 1953420-1954502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1953603-1954209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1953603-19542 09 bp Feature: gene Location: 1955187-1955810 bp Feature: gene Location: 1955807-1956646 bp Feature: domain Description: PRK00724 Location: 1955834-1956632 bp Feature: domain Description: PRK0072 4 Location: 1955834-1956632 bp Feature: gene Location: 2388483-2389442 bp Feature: domain Description: PRK07399 Location: 2388498-2389434 bp Feature: domain Description: PRK07399 Location: 2 388498-2 389434 bp Feature: gene Location: 2389825-2390508 bp Feature: domain Description: tmk Location: 2389927-2390494 bp Feature: domain Description: tmk Location: 2 38992 7-2 390494 bp Feature: gene Location: 2390505-2392220 bp Feature: RT Description: RVT_N Location: 2390541-2390784 bp Feature: RT Description: RVT_N Location: 2 390541-2 390784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2390829-2391525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39082 9-2 39152 5 bp Feature: domain Description: GIIM Note: maturase Location: 2391609-2391837 bp Feature: domain Description: GIIM Note: maturase Location: 2 391609-2 391837 bp Feature: domain Description: HNH Note: nucleases Location: 2392059-2392194 bp Feature: domain Description: HNH Note: nucleases Location: 2 392 059-2 392 194 bp Feature: gene Location: 2392973-2393203 bp Feature: gene Location: 2393220-2395190 bp Feature: domain Description: AA_permease_2 Location: 2393244-2393625 bp Feature: domain Description: AA_permease_2 Location: 2 3932 44-2 39362 5 bp Feature: domain Description: CitA Location: 2393823-2394216 bp Feature: domain Description: CitA Location: 2 39382 3-2 3942 16 bp Feature: domain Description: BaeS Location: 2394276-2395179 bp Feature: domain Description: BaeS Location: 2 3942 76-2 395179 bp Feature: gene Location: 4106128-4107135 bp Feature: domain Description: MscS Location: 4106167-4106995 bp Feature: domain Description: MscS Location: 4106167-4106995 bp Feature: gene Location: 4108697-4109017 bp Feature: domain Description: HD_4 Location: 4108703-4108850 bp Feature: domain Description: HD_4 Location: 4108703-4108850 bp Feature: gene Location: 4109207-4110943 bp Feature: RT Description: RVT_N Location: 4109237-4109483 bp Feature: RT Description: RVT_N Location: 41092 37-4109483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109525-4110203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410952 5-41102 03 bp Feature: domain Description: GIIM Note: maturase Location: 4110302-4110536 bp Feature: domain Description: GIIM Note: maturase Location: 4110302 -4110536 bp Feature: domain Description: McrA Location: 4110617-4110887 bp Feature: domain Description: McrA Location: 4110617-4110887 bp Feature: gene Location: 4111594-4111797 bp Feature: domain Description: SpoT Location: 4111618-4111783 bp Feature: domain Description: SpoT Location: 4111618-4111783 bp Feature: gene Location: 4111805-4113214 bp Feature: domain Description: TIGR03985 Location: 4112471-4113209 bp Feature: domain Description: TIGR03985 Location: 4112 471-41132 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpC, RVT-Retrons, PRK00724 (formate dehydrogenase accessory sulfurtransferase FdhD), PRK07399 (DNA polymerase III subunit delta'; Validated), tmk (PRK00698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), AA_permease_2 (pfam13520)
CitA (COG3290), BaeS (COG0642), MscS (COG0668), HD_4 (pfam13328), McrA (COG4058), SpoT (COG0317), TIGR03985 (CRISPR-associated protein, TIGR03985 family)