myRT

myRT report for GCA_002368055.1_ASM236805v1

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Seq: AP018308.1 Aulosira laxa NIES-50 plasmid plasmid1 DNA, complete genome (292325 bp)
Overview 1 RT 1: 219726-223306 bp Neighborhood of RT #1 [219726, 223306] RVT_N RVT-GII GIIM McrA ParM_like Feature: gene Location: 219726-219938 bp Feature: gene Location: 220052-220285 bp Feature: gene Location: 220481-222058 bp Feature: RT Description: RVT_N Location: 220520-220754 bp Feature: RT Description: RVT_N Location: 220520-220754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 220811-221468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22081 1 -221 468 bp Feature: domain Description: GIIM Note: maturase Location: 221525-221705 bp Feature: domain Description: GIIM Note: maturase Location: 221 525-221 705 bp Feature: domain Description: McrA Location: 221705-222047 bp Feature: domain Description: McrA Location: 221 705-222047 bp Feature: gene Location: 222070-222978 bp Feature: domain Description: ParM_like Location: 222241-222943 bp Feature: domain Description: ParM_like Location: 222241 -222943 bp Feature: gene Location: 223001-223306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ParM_like (cd10227)

Seq: AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome (8460156 bp)
Overview 1 RT 1: 1112304-1117987 bp 2 RT 2: 2292847-2299435 bp 3 RT 3: 3120339-3125048 bp 4 RT 4: 3152520-3158208 bp 5 RT 5: 8085414-8092168 bp Neighborhood of RT #1 [1112304, 1118055] Y1_Tnp InsQ RVT_N RVT-GII GIIM McrA GlpG COG1340 Neighborhood of RT #2 [2292847, 2299608] DUF1815 DUF2839 RVT_N RVT-GII McrA DinG M48_Ste24p_like Neighborhood of RT #3 [3120339, 3125068] InsQ RVT_N RVT-GII GIIM McrA InsQ PRK12497 Neighborhood of RT #4 [3152520, 3158228] TPR TPR TPR TPR RVT_N RVT-GII GIIM McrA fghA_ester_D Neighborhood of RT #5 [8085414, 8092206] ComEA sigpep_I_bact RVT-Retrons clpC Feature: gene Location: 1112304-1112708 bp Feature: domain Description: Y1_Tnp Location: 1112331-1112694 bp Feature: domain Description: Y1_Tnp Location: 1112 331-1112 694 bp Feature: gene Location: 1112768-1113340 bp Feature: domain Description: InsQ Location: 1112771-1113317 bp Feature: domain Description: InsQ Location: 1112 771-1113317 bp Feature: gene Location: 1113930-1115819 bp Feature: RT Description: RVT_N Location: 1114044-1114290 bp Feature: RT Description: RVT_N Location: 1114044-11142 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114332-1115028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114332 -111502 8 bp Feature: domain Description: GIIM Note: maturase Location: 1115115-1115340 bp Feature: domain Description: GIIM Note: maturase Location: 1115115-1115340 bp Feature: domain Description: McrA Location: 1115412-1115733 bp Feature: domain Description: McrA Location: 1115412 -1115733 bp Feature: gene Location: 1116536-1117210 bp Feature: domain Description: GlpG Location: 1116542-1117199 bp Feature: domain Description: GlpG Location: 1116542 -1117199 bp Feature: gene Location: 1117825-1118055 bp Feature: domain Description: COG1340 Location: 1117837-1117987 bp Feature: domain Description: COG1340 Location: 1117837-1117987 bp Feature: gene Location: 2292847-2293194 bp Feature: domain Description: DUF1815 Location: 2292853-2293147 bp Feature: domain Description: DUF1815 Location: 2 2 92 853-2 2 93147 bp Feature: gene Location: 2294225-2294449 bp Feature: domain Description: DUF2839 Location: 2294261-2294438 bp Feature: domain Description: DUF2 839 Location: 2 2 942 61-2 2 94438 bp Feature: gene Location: 2294503-2296077 bp Feature: RT Description: RVT_N Location: 2294539-2294779 bp Feature: RT Description: RVT_N Location: 2 2 94539-2 2 94779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294836-2295493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 94836-2 2 95493 bp Feature: domain Description: McrA Location: 2295724-2296054 bp Feature: domain Description: McrA Location: 2 2 9572 4-2 2 96054 bp Feature: gene Location: 2296943-2298520 bp Feature: domain Description: DinG Location: 2296985-2298491 bp Feature: domain Description: DinG Location: 2 2 96985-2 2 98491 bp Feature: gene Location: 2298646-2299608 bp Feature: domain Description: M48_Ste24p_like Location: 2298799-2299435 bp Feature: domain Description: M48_Ste2 4p_like Location: 2 2 98799-2 2 99435 bp Feature: gene Location: 3120339-3120653 bp Feature: gene Location: 3120705-3121673 bp Feature: domain Description: InsQ Location: 3120807-3121554 bp Feature: domain Description: InsQ Location: 312 0807-312 1554 bp Feature: gene Location: 3121700-3123433 bp Feature: RT Description: RVT_N Location: 3121718-3121964 bp Feature: RT Description: RVT_N Location: 312 1718-312 1964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3122006-3122705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 2 006-312 2 705 bp Feature: domain Description: GIIM Note: maturase Location: 3122807-3123032 bp Feature: domain Description: GIIM Note: maturase Location: 312 2 807-312 3032 bp Feature: domain Description: McrA Location: 3123113-3123383 bp Feature: domain Description: McrA Location: 312 3113-312 3383 bp Feature: gene Location: 3123984-3124454 bp Feature: domain Description: InsQ Location: 3123990-3124329 bp Feature: domain Description: InsQ Location: 312 3990-312 432 9 bp Feature: gene Location: 3124586-3125068 bp Feature: domain Description: PRK12497 Location: 3124610-3125048 bp Feature: domain Description: PRK12 497 Location: 312 4610-312 5048 bp Feature: gene Location: 3152520-3154397 bp Feature: domain Description: TPR Location: 3153258-3153546 bp Feature: domain Description: TPR Location: 31532 58-3153546 bp Feature: domain Description: TPR Location: 3153717-3153930 bp Feature: domain Description: TPR Location: 3153717-3153930 bp Feature: domain Description: TPR Location: 3153939-3154224 bp Feature: domain Description: TPR Location: 3153939-31542 2 4 bp Feature: domain Description: TPR Location: 3154245-3154338 bp Feature: domain Description: TPR Location: 31542 45-3154338 bp Feature: gene Location: 3154786-3154896 bp Feature: gene Location: 3154940-3156829 bp Feature: RT Description: RVT_N Location: 3155054-3155300 bp Feature: RT Description: RVT_N Location: 3155054-3155300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3155342-3156038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3155342 -3156038 bp Feature: domain Description: GIIM Note: maturase Location: 3156125-3156350 bp Feature: domain Description: GIIM Note: maturase Location: 315612 5-3156350 bp Feature: domain Description: McrA Location: 3156443-3156716 bp Feature: domain Description: McrA Location: 3156443-3156716 bp Feature: gene Location: 3156856-3157002 bp Feature: gene Location: 3157419-3158228 bp Feature: domain Description: fghA_ester_D Location: 3157434-3158208 bp Feature: domain Description: fghA_ester_D Location: 3157434-31582 08 bp Feature: gene Location: 8085414-8085947 bp Feature: domain Description: ComEA Location: 8085477-8085945 bp Feature: domain Description: ComEA Location: 8085477-8085945 bp Feature: gene Location: 8086156-8086728 bp Feature: domain Description: sigpep_I_bact Location: 8086279-8086711 bp Feature: domain Description: sigpep_I_bact Location: 80862 79-8086711 bp Feature: gene Location: 8087616-8088689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8087799-8088405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8087799-8088405 bp Feature: gene Location: 8088720-8089628 bp Feature: gene Location: 8089738-8092206 bp Feature: domain Description: clpC Location: 8089741-8092168 bp Feature: domain Description: clpC Location: 8089741-8092 168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), GlpG (COG0705), COG1340 (Uncharacterized coiled-coil protein, contains DUF342 domain ), DUF1815 (pfam08844), DUF2839 (pfam10999)
DinG (COG1199), M48_Ste24p_like (cd07328), PRK12497 (YraN family protein), TPR (smart00028), fghA_ester_D (TIGR02821), ComEA (COG1555), sigpep_I_bact (TIGR02227), RVT-Retrons, clpC

Seq: AP018309.1 Aulosira laxa NIES-50 plasmid plasmid2 DNA, complete genome (241484 bp)
Overview 1 RT 1: 81323-86714 bp 2 RT 2: 201565-207818 bp Neighborhood of RT #1 [81323, 86719] psbA RVT-GII McrA PinE Neighborhood of RT #2 [201565, 207826] COG4941 RVT_N RVT-GII GIIM McrA Hydrolase_4 KOG1454 Feature: gene Location: 81323-82408 bp Feature: domain Description: psbA Location: 81326-82406 bp Feature: domain Description: psbA Location: 813 26-82406 bp Feature: gene Location: 82523-84472 bp Feature: gene Location: 84841-86004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84862-85420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84862-85420 bp Feature: domain Description: McrA Location: 85654-85975 bp Feature: domain Description: McrA Location: 85654-85975 bp Feature: gene Location: 86112-86462 bp Feature: gene Location: 86474-86719 bp Feature: domain Description: PinE Location: 86513-86714 bp Feature: domain Description: PinE Location: 86513 -86714 bp Feature: gene Location: 201565-202833 bp Feature: domain Description: COG4941 Location: 201598-202813 bp Feature: domain Description: COG4941 Location: 201598-202813 bp Feature: gene Location: 203139-203504 bp Feature: gene Location: 203720-205285 bp Feature: RT Description: RVT_N Location: 203759-203999 bp Feature: RT Description: RVT_N Location: 203 759-203 999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204050-204707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204050-204707 bp Feature: domain Description: GIIM Note: maturase Location: 204764-204959 bp Feature: domain Description: GIIM Note: maturase Location: 204764-204959 bp Feature: domain Description: McrA Location: 204971-205262 bp Feature: domain Description: McrA Location: 204971-205262 bp Feature: gene Location: 205833-206930 bp Feature: domain Description: Hydrolase_4 Location: 206001-206361 bp Feature: domain Description: Hydrolase_4 Location: 206001-2063 61 bp Feature: gene Location: 206960-207826 bp Feature: domain Description: KOG1454 Location: 207077-207818 bp Feature: domain Description: KOG1454 Location: 207077-207818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psbA (TIGR01151), RVT-GII, McrA (COG4058), PinE (COG1961), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), RVT_N (pfam13655), GIIM (pfam08388), Hydrolase_4 (pfam12146), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) )

Seq: AP018310.1 Aulosira laxa NIES-50 plasmid plasmid3 DNA, complete genome (216164 bp)
Overview 1 RT 1: 162669-168395 bp Neighborhood of RT #1 [162669, 168400] ycf46 RVT_N RVT-GII McrA MFS_MJ1317_like OmpR Feature: gene Location: 162669-164336 bp Feature: domain Description: ycf46 Location: 163044-164259 bp Feature: domain Description: ycf4 6 Location: 16304 4 -164 259 bp Feature: gene Location: 164506-164907 bp Feature: gene Location: 165437-167011 bp Feature: RT Description: RVT_N Location: 165473-165719 bp Feature: RT Description: RVT_N Location: 1654 73-165719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165770-166427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165770-1664 27 bp Feature: domain Description: McrA Location: 166661-166982 bp Feature: domain Description: McrA Location: 166661-166982 bp Feature: gene Location: 167381-167617 bp Feature: domain Description: MFS_MJ1317_like Location: 167393-167609 bp Feature: domain Description: MFS_MJ1317_like Location: 167393-167609 bp Feature: gene Location: 167726-168400 bp Feature: domain Description: OmpR Location: 167729-168395 bp Feature: domain Description: OmpR Location: 167729-168395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ycf46 (CHL00195), RVT_N (pfam13655), RVT-GII, McrA (COG4058), MFS_MJ1317_like (cd17370), OmpR (COG0745)