myRT

myRT report for GCA_002368195.1_ASM236819v1

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Seq: AP018178.1 Calothrix sp. NIES-2100 DNA, nearly complete genome (9909373 bp)
Overview 1 RT 1: 832253-838475 bp 2 RT 2: 6176116-6186562 bp 3 RT 3: 7618822-7622965 bp 4 RT 4: 7864957-7871451 bp 5 RT 5: 8582858-8588676 bp 6 RT 6: 9523609-9530329 bp Neighborhood of RT #1 [832253, 838477] RVT_N RVT-GII RVT-GII GIIM McrA Cas2_I_II_III cas1_CYANO Neighborhood of RT #2 [6176116, 6186579] NB-ARC WD40 WD40 WD40 WD40 RVT_N RVT-GII RVT-GII GIIM McrA Phosphoesterase Phosphoesterase Tab2_like Neighborhood of RT #3 [7618822, 7622985] Nterm_to_SelD RVT_N RVT-GII RVT-GII GIIM McrA Neighborhood of RT #4 [7864957, 7871570] DDE_Tnp_IS66 DUF4157 DUF4157 RVT-GII RVT-GII GIIM McrA DUF4255 nucleoid_noc nucleoid_noc ZnMc_MMP_like_1 Neighborhood of RT #5 [8582858, 8588699] PPOX_FMN_cyano RTPR RVT_N RVT-GII GIIM HNH RNR_II_monomer RTPR Neighborhood of RT #6 [9523609, 9530329] RelE RVT_N RVT-GII GIIM HNHc secA Feature: gene Location: 832253-832621 bp Feature: gene Location: 832857-832997 bp Feature: gene Location: 833772-835283 bp Feature: RT Description: RVT_N Location: 833811-834048 bp Feature: RT Description: RVT_N Location: 83381 1 -834048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834108-834534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8341 08-834534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834537-834702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834537-834702 bp Feature: domain Description: GIIM Note: maturase Location: 834759-834942 bp Feature: domain Description: GIIM Note: maturase Location: 834759-834942 bp Feature: domain Description: McrA Location: 834960-835263 bp Feature: domain Description: McrA Location: 834960-835263 bp Feature: gene Location: 837158-837430 bp Feature: domain Description: Cas2_I_II_III Location: 837167-837395 bp Feature: domain Description: Cas2_I_II_III Location: 8371 67-837395 bp Feature: gene Location: 837473-838477 bp Feature: domain Description: cas1_CYANO Location: 837482-838475 bp Feature: domain Description: cas1 _CYANO Location: 837482-838475 bp Feature: gene Location: 6176116-6179517 bp Feature: domain Description: NB-ARC Location: 6176374-6176962 bp Feature: domain Description: NB-ARC Location: 61 76374-61 76962 bp Feature: domain Description: WD40 Location: 6177667-6178504 bp Feature: domain Description: WD40 Location: 61 77667-61 78504 bp Feature: domain Description: WD40 Location: 6178513-6178630 bp Feature: domain Description: WD40 Location: 61 7851 3-61 78630 bp Feature: domain Description: WD40 Location: 6178645-6178756 bp Feature: domain Description: WD40 Location: 61 78645-61 78756 bp Feature: domain Description: WD40 Location: 6178864-6179419 bp Feature: domain Description: WD40 Location: 61 78864-61 7941 9 bp Feature: gene Location: 6180012-6180338 bp Feature: gene Location: 6181671-6183182 bp Feature: RT Description: RVT_N Location: 6181710-6181947 bp Feature: RT Description: RVT_N Location: 61 81 71 0-61 81 947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6182007-6182433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 82007-61 82433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6182436-6182601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 82436-61 82601 bp Feature: domain Description: GIIM Note: maturase Location: 6182658-6182841 bp Feature: domain Description: GIIM Note: maturase Location: 61 82658-61 82841 bp Feature: domain Description: McrA Location: 6182859-6183162 bp Feature: domain Description: McrA Location: 61 82859-61 831 62 bp Feature: gene Location: 6184425-6185576 bp Feature: domain Description: Phosphoesterase Location: 6184626-6184683 bp Feature: domain Description: Phosphoesterase Location: 61 84626-61 84683 bp Feature: domain Description: Phosphoesterase Location: 6184683-6185496 bp Feature: domain Description: Phosphoesterase Location: 61 84683-61 85496 bp Feature: gene Location: 6185716-6186579 bp Feature: domain Description: Tab2_like Location: 6185731-6186562 bp Feature: domain Description: Tab2_like Location: 61 85731 -61 86562 bp Feature: gene Location: 7618822-7620036 bp Feature: domain Description: Nterm_to_SelD Location: 7618873-7620007 bp Feature: domain Description: Nterm_to_SelD Location: 761 8873-7620007 bp Feature: gene Location: 7620763-7621092 bp Feature: gene Location: 7621474-7622985 bp Feature: RT Description: RVT_N Location: 7621513-7621750 bp Feature: RT Description: RVT_N Location: 7621 51 3-7621 750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7621810-7622236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7621 81 0-7622236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622239-7622404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622239-7622404 bp Feature: domain Description: GIIM Note: maturase Location: 7622461-7622644 bp Feature: domain Description: GIIM Note: maturase Location: 7622461 -7622644 bp Feature: domain Description: McrA Location: 7622662-7622965 bp Feature: domain Description: McrA Location: 7622662-7622965 bp Feature: gene Location: 7864957-7865295 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7865041-7865206 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7865041 -7865206 bp Feature: gene Location: 7865243-7866730 bp Feature: domain Description: DUF4157 Location: 7865369-7865477 bp Feature: domain Description: DUF41 57 Location: 7865369-7865477 bp Feature: domain Description: DUF4157 Location: 7865582-7865777 bp Feature: domain Description: DUF41 57 Location: 7865582-7865777 bp Feature: gene Location: 7867050-7868204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867056-7867446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867056-7867446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867455-7867620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7867455-7867620 bp Feature: domain Description: GIIM Note: maturase Location: 7867677-7867869 bp Feature: domain Description: GIIM Note: maturase Location: 7867677-7867869 bp Feature: domain Description: McrA Location: 7867932-7868184 bp Feature: domain Description: McrA Location: 7867932-78681 84 bp Feature: gene Location: 7868634-7869101 bp Feature: domain Description: DUF4255 Location: 7868649-7869042 bp Feature: domain Description: DUF4255 Location: 7868649-7869042 bp Feature: gene Location: 7869966-7871570 bp Feature: domain Description: nucleoid_noc Location: 7870131-7870452 bp Feature: domain Description: nucleoid_noc Location: 78701 31 -7870452 bp Feature: domain Description: nucleoid_noc Location: 7870581-7870833 bp Feature: domain Description: nucleoid_noc Location: 7870581 -7870833 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 7871292-7871451 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 7871 292-7871 451 bp Feature: gene Location: 8582858-8583445 bp Feature: domain Description: PPOX_FMN_cyano Location: 8582867-8583443 bp Feature: domain Description: PPOX_FMN_cyano Location: 8582867-8583443 bp Feature: gene Location: 8583602-8583865 bp Feature: domain Description: RTPR Location: 8583626-8583860 bp Feature: domain Description: RTPR Location: 8583626-8583860 bp Feature: gene Location: 8584531-8586330 bp Feature: RT Description: RVT_N Location: 8584573-8584819 bp Feature: RT Description: RVT_N Location: 8584573-858481 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8584861-8585533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8584861 -8585533 bp Feature: domain Description: GIIM Note: maturase Location: 8585632-8585869 bp Feature: domain Description: GIIM Note: maturase Location: 8585632-8585869 bp Feature: domain Description: HNH Note: nucleases Location: 8586091-8586229 bp Feature: domain Description: HNH Note: nucleases Location: 8586091 -8586229 bp Feature: gene Location: 8586439-8587311 bp Feature: domain Description: RNR_II_monomer Location: 8586442-8587306 bp Feature: domain Description: RNR_II_monomer Location: 8586442-8587306 bp Feature: gene Location: 8587623-8588699 bp Feature: domain Description: RTPR Location: 8587629-8588676 bp Feature: domain Description: RTPR Location: 8587629-8588676 bp Feature: gene Location: 9523609-9523866 bp Feature: gene Location: 9523856-9524221 bp Feature: domain Description: RelE Location: 9523883-9524174 bp Feature: domain Description: RelE Location: 9523883-95241 74 bp Feature: gene Location: 9525044-9526744 bp Feature: RT Description: RVT_N Location: 9525092-9525332 bp Feature: RT Description: RVT_N Location: 9525092-9525332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9525386-9526025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9525386-9526025 bp Feature: domain Description: GIIM Note: maturase Location: 9526097-9526331 bp Feature: domain Description: GIIM Note: maturase Location: 9526097-9526331 bp Feature: domain Description: HNHc Note: nucleases Location: 9526535-9526694 bp Feature: domain Description: HNHc Note: nucleases Location: 9526535-9526694 bp Feature: gene Location: 9527017-9529809 bp Feature: domain Description: secA Location: 9527020-9529792 bp Feature: domain Description: secA Location: 9527020-9529792 bp Feature: gene Location: 9530075-9530329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Cas2_I_II_III (cl11442), cas1_CYANO (TIGR04093), NB-ARC (pfam00931), WD40 (smart00320), Phosphoesterase (pfam04185), Tab2_like
Nterm_to_SelD (TIGR03169), DDE_Tnp_IS66 (pfam03050), DUF4157 (pfam13699), DUF4255 (pfam14065), nucleoid_noc (TIGR04285), ZnMc_MMP_like_1 (cd04279), PPOX_FMN_cyano (TIGR04026), RTPR (TIGR02505), HNH (pfam01844), RNR_II_monomer (cd01676)
RelE (pfam06296), HNHc (smart00507), secA (TIGR00963)