myRT

myRT report for GCA_002368275.1_ASM236827v1

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Seq: AP018233.1 Fremyella diplosiphon NIES-3275 DNA, nearly complete genome (8894230 bp)
Overview 1 RT 1: 706219-712953 bp 2 RT 2: 2159212-2163609 bp 3 RT 3: 2276655-2282498 bp 4 RT 4: 4396798-4402475 bp 5 RT 5: 4578655-4582893 bp 6 RT 6: 4926523-4932453 bp 7 RT 7: 6489136-6493504 bp 8 RT 8: 7417902-7422820 bp 9 RT 9: 8384637-8391492 bp Neighborhood of RT #1 [706219, 712964] AMS1 RVT_N RVT-GII YkfC HNH PsbN psbH Neighborhood of RT #2 [2159212, 2163620] Ycf54 SnoaL RVT_N RVT-GII McrA PdxJ Neighborhood of RT #3 [2276655, 2282498] ALDH_DDALDH nitrilase_4 RVT-GII Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #4 [4396798, 4402483] 23S_rRNA_IVP_like RVT_N RVT-GII GIIM McrA UvrD UvrD Neighborhood of RT #5 [4578655, 4582964] Doc RVT_N RVT-GII YkfC HNH Doc arc_metj Neighborhood of RT #6 [4926523, 4932455] PRK13922 PRK13927 RVT_N RVT-GII GIIM HNHc PRK07459 YggE Neighborhood of RT #7 [6489136, 6493524] DUF433 RVT-DGRs Avd_like COG4249 YfmG Neighborhood of RT #8 [7417902, 7422820] DUF2997 RVT_N RVT-GII YkfC HNH ycf46 Neighborhood of RT #9 [8384637, 8391515] PurU DUF4340 RVT_N RVT-GII YkfC HNH GldG ABC_perm_GldF ABC_perm_GldF Feature: gene Location: 706219-709440 bp Feature: domain Description: AMS1 Location: 706270-709426 bp Feature: domain Description: AMS1 Location: 706270-709426 bp Feature: gene Location: 709481-709693 bp Feature: gene Location: 710283-712037 bp Feature: RT Description: RVT_N Location: 710319-710562 bp Feature: RT Description: RVT_N Location: 71 031 9-71 0562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710607-711288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 0607-71 1 288 bp Feature: domain Description: YkfC Location: 711417-711726 bp Feature: domain Description: YkfC Location: 71 1 41 7-71 1 726 bp Feature: domain Description: HNH Note: nucleases Location: 711846-711981 bp Feature: domain Description: HNH Note: nucleases Location: 71 1 846-71 1 981 bp Feature: gene Location: 712186-712317 bp Feature: domain Description: PsbN Location: 712189-712315 bp Feature: domain Description: PsbN Location: 71 21 89-71 231 5 bp Feature: gene Location: 712761-712964 bp Feature: domain Description: psbH Location: 712764-712953 bp Feature: domain Description: psbH Location: 71 2764-71 2953 bp Feature: gene Location: 2159212-2159541 bp Feature: domain Description: Ycf54 Location: 2159221-2159491 bp Feature: domain Description: Ycf54 Location: 21 59221 -21 59491 bp Feature: gene Location: 2159605-2160093 bp Feature: domain Description: SnoaL Location: 2159743-2159989 bp Feature: domain Description: SnoaL Location: 21 59743-21 59989 bp Feature: gene Location: 2160054-2161628 bp Feature: RT Description: RVT_N Location: 2160090-2160330 bp Feature: RT Description: RVT_N Location: 21 60090-21 60330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2160387-2161041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 60387-21 61 041 bp Feature: domain Description: McrA Location: 2161275-2161605 bp Feature: domain Description: McrA Location: 21 61 275-21 61 605 bp Feature: gene Location: 2162214-2162588 bp Feature: gene Location: 2162832-2163620 bp Feature: domain Description: PdxJ Location: 2162907-2163609 bp Feature: domain Description: PdxJ Location: 21 62907-21 63609 bp Feature: gene Location: 2276655-2278073 bp Feature: domain Description: ALDH_DDALDH Location: 2276679-2278023 bp Feature: domain Description: ALDH_DDALDH Location: 2276679-2278023 bp Feature: gene Location: 2278485-2279537 bp Feature: domain Description: nitrilase_4 Location: 2278527-2279400 bp Feature: domain Description: nitrilase_4 Location: 2278527-2279400 bp Feature: gene Location: 2279792-2280193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279798-2280170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279798-22801 70 bp Feature: gene Location: 2280080-2281807 bp Feature: domain Description: Resolvase Location: 2280104-2280542 bp Feature: domain Description: Resolvase Location: 22801 04-2280542 bp Feature: domain Description: Recombinase Location: 2280635-2280995 bp Feature: domain Description: Recombinase Location: 2280635-2280995 bp Feature: domain Description: Zn_ribbon_recom Location: 2281037-2281241 bp Feature: domain Description: Zn_ribbon_recom Location: 2281 037-2281 241 bp Feature: gene Location: 2281863-2282498 bp Feature: gene Location: 4396798-4397163 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 4396834-4397143 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 4396834-43971 43 bp Feature: gene Location: 4397205-4398059 bp Feature: gene Location: 4398835-4399575 bp Feature: RT Description: RVT_N Location: 4398949-4399195 bp Feature: RT Description: RVT_N Location: 4398949-43991 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4399237-4399525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4399237-4399525 bp Feature: gene Location: 4399671-4400177 bp Feature: domain Description: GIIM Note: maturase Location: 4399677-4399788 bp Feature: domain Description: GIIM Note: maturase Location: 4399677-4399788 bp Feature: domain Description: McrA Location: 4399881-4400151 bp Feature: domain Description: McrA Location: 4399881 -44001 51 bp Feature: gene Location: 4400417-4402483 bp Feature: domain Description: UvrD Location: 4401161-4402202 bp Feature: domain Description: UvrD Location: 4401 1 61 -4402202 bp Feature: domain Description: UvrD Location: 4402274-4402475 bp Feature: domain Description: UvrD Location: 4402274-4402475 bp Feature: gene Location: 4578655-4579311 bp Feature: gene Location: 4579910-4580209 bp Feature: domain Description: Doc Location: 4580024-4580186 bp Feature: domain Description: Doc Location: 4580024-45801 86 bp Feature: gene Location: 4580209-4581963 bp Feature: RT Description: RVT_N Location: 4580245-4580488 bp Feature: RT Description: RVT_N Location: 4580245-4580488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4580533-4581214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4580533-4581 21 4 bp Feature: domain Description: YkfC Location: 4581343-4581652 bp Feature: domain Description: YkfC Location: 4581 343-4581 652 bp Feature: domain Description: HNH Note: nucleases Location: 4581772-4581907 bp Feature: domain Description: HNH Note: nucleases Location: 4581 772-4581 907 bp Feature: gene Location: 4582534-4582767 bp Feature: domain Description: Doc Location: 4582540-4582750 bp Feature: domain Description: Doc Location: 4582540-4582750 bp Feature: gene Location: 4582767-4582964 bp Feature: domain Description: arc_metj Location: 4582770-4582893 bp Feature: domain Description: arc_metj Location: 4582770-4582893 bp Feature: gene Location: 4926523-4927338 bp Feature: domain Description: PRK13922 Location: 4926718-4927273 bp Feature: domain Description: PRK1 3922 Location: 492671 8-4927273 bp Feature: gene Location: 4927460-4928467 bp Feature: domain Description: PRK13927 Location: 4927463-4928441 bp Feature: domain Description: PRK1 3927 Location: 4927463-4928441 bp Feature: gene Location: 4929548-4931239 bp Feature: RT Description: RVT_N Location: 4929581-4929827 bp Feature: RT Description: RVT_N Location: 4929581 -4929827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4929869-4930535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4929869-4930535 bp Feature: domain Description: GIIM Note: maturase Location: 4930637-4930847 bp Feature: domain Description: GIIM Note: maturase Location: 4930637-4930847 bp Feature: domain Description: HNHc Note: nucleases Location: 4931069-4931216 bp Feature: domain Description: HNHc Note: nucleases Location: 4931 069-4931 21 6 bp Feature: gene Location: 4931348-4931623 bp Feature: domain Description: PRK07459 Location: 4931351-4931612 bp Feature: domain Description: PRK07459 Location: 4931 351 -4931 61 2 bp Feature: gene Location: 4931706-4932455 bp Feature: domain Description: YggE Location: 4931766-4932453 bp Feature: domain Description: YggE Location: 4931 766-4932453 bp Feature: gene Location: 6489136-6489465 bp Feature: domain Description: DUF433 Location: 6489196-6489325 bp Feature: domain Description: DUF433 Location: 64891 96-6489325 bp Feature: gene Location: 6489647-6489910 bp Feature: gene Location: 6489962-6491005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6490169-6490913 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64901 69-649091 3 bp Feature: gene Location: 6491140-6491478 bp Feature: domain Description: Avd_like Location: 6491158-6491464 bp Feature: domain Description: Avd_like Location: 6491 1 58-6491 464 bp Feature: gene Location: 6491581-6493524 bp Feature: domain Description: COG4249 Location: 6491584-6492292 bp Feature: domain Description: COG4249 Location: 6491 584-6492292 bp Feature: domain Description: YfmG Location: 6492745-6493504 bp Feature: domain Description: YfmG Location: 6492745-6493504 bp Feature: gene Location: 7417902-7418123 bp Feature: domain Description: DUF2997 Location: 7417926-7418037 bp Feature: domain Description: DUF2997 Location: 741 7926-741 8037 bp Feature: gene Location: 7418196-7418543 bp Feature: gene Location: 7419114-7420868 bp Feature: RT Description: RVT_N Location: 7419150-7419393 bp Feature: RT Description: RVT_N Location: 741 91 50-741 9393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7419438-7420119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 9438-74201 1 9 bp Feature: domain Description: YkfC Location: 7420248-7420557 bp Feature: domain Description: YkfC Location: 7420248-7420557 bp Feature: domain Description: HNH Note: nucleases Location: 7420677-7420812 bp Feature: domain Description: HNH Note: nucleases Location: 7420677-742081 2 bp Feature: gene Location: 7420868-7422268 bp Feature: domain Description: ycf46 Location: 7421006-7422203 bp Feature: domain Description: ycf46 Location: 7421 006-7422203 bp Feature: gene Location: 7422452-7422820 bp Feature: gene Location: 8384637-8385530 bp Feature: domain Description: PurU Location: 8384697-8385525 bp Feature: domain Description: PurU Location: 8384697-8385525 bp Feature: gene Location: 8385638-8386243 bp Feature: domain Description: DUF4340 Location: 8385863-8386202 bp Feature: domain Description: DUF4340 Location: 8385863-8386202 bp Feature: gene Location: 8387056-8388810 bp Feature: RT Description: RVT_N Location: 8387092-8387335 bp Feature: RT Description: RVT_N Location: 8387092-8387335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8387380-8388061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8387380-8388061 bp Feature: domain Description: YkfC Location: 8388190-8388499 bp Feature: domain Description: YkfC Location: 83881 90-8388499 bp Feature: domain Description: HNH Note: nucleases Location: 8388619-8388754 bp Feature: domain Description: HNH Note: nucleases Location: 838861 9-8388754 bp Feature: gene Location: 8388833-8390590 bp Feature: domain Description: GldG Location: 8388851-8390507 bp Feature: domain Description: GldG Location: 8388851 -8390507 bp Feature: gene Location: 8390703-8391515 bp Feature: domain Description: ABC_perm_GldF Location: 8390730-8390829 bp Feature: domain Description: ABC_perm_GldF Location: 8390730-8390829 bp Feature: domain Description: ABC_perm_GldF Location: 8390922-8391492 bp Feature: domain Description: ABC_perm_GldF Location: 8390922-8391 492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AMS1 (COG0383), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PsbN (pfam02468), psbH (PRK02624), Ycf54 (pfam10674), SnoaL (pfam07366), McrA (COG4058)
PdxJ (pfam03740), ALDH_DDALDH (cd07099), nitrilase_4 (cd07582), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), 23S_rRNA_IVP_like (cd16377), GIIM (pfam08388), UvrD (COG0210), Doc (COG3654)
arc_metj (LOAD_arc_metj), PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), HNHc (smart00507), PRK07459 (single-stranded DNA-binding protein; Provisional), YggE (COG2968), DUF433 (pfam04255), RVT-DGRs, Avd_like (cd16376), COG4249 (Uncharacterized protein, contains caspase domain )
YfmG (COG1262), DUF2997 (pfam11211), ycf46 (CHL00195), PurU (TIGR00655), DUF4340 (pfam14238), GldG (TIGR03521), ABC_perm_GldF (TIGR03518)

Seq: AP018240.1 Fremyella diplosiphon NIES-3275 plasmid plasmid07 DNA, complete genome (55884 bp)
Overview 1 RT 1: 6973-11168 bp Neighborhood of RT #1 [6973, 11209] ParM_like RVT_N RVT-GII GIIM McrA RHH_5 Feature: gene Location: 6973-7236 bp Feature: gene Location: 7240-8109 bp Feature: domain Description: ParM_like Location: 7249-8080 bp Feature: domain Description: ParM_like Location: 72 49-8080 bp Feature: gene Location: 8131-9954 bp Feature: RT Description: RVT_N Location: 8167-8413 bp Feature: RT Description: RVT_N Location: 8167-8413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8455-9148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8455-9148 bp Feature: domain Description: GIIM Note: maturase Location: 9247-9481 bp Feature: domain Description: GIIM Note: maturase Location: 92 47-9481 bp Feature: domain Description: McrA Location: 9571-9859 bp Feature: domain Description: McrA Location: 9571-9859 bp Feature: gene Location: 10534-10782 bp Feature: gene Location: 11021-11209 bp Feature: domain Description: RHH_5 Location: 11036-11168 bp Feature: domain Description: RHH_5 Location: 11036-11168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHH_5 (pfam07878), ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AP018247.1 Fremyella diplosiphon NIES-3275 plasmid plasmid14 DNA, complete genome (29597 bp)
Overview 1 RT 1: 26491-29494 bp Neighborhood of RT #1 [26491, 29589] ParG RVT_N RVT-GII GIIM McrA Feature: gene Location: 26491-26685 bp Feature: domain Description: ParG Location: 26563-26662 bp Feature: domain Description: ParG Location: 26563 -26662 bp Feature: gene Location: 26938-27186 bp Feature: gene Location: 27766-29589 bp Feature: RT Description: RVT_N Location: 27802-28048 bp Feature: RT Description: RVT_N Location: 27802-28048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28090-28783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28090-28783 bp Feature: domain Description: GIIM Note: maturase Location: 28882-29116 bp Feature: domain Description: GIIM Note: maturase Location: 28882-29116 bp Feature: domain Description: McrA Location: 29206-29494 bp Feature: domain Description: McrA Location: 29206-29494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParG (pfam09274), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)