myRT

myRT report for GCA_002368295.1_ASM236829v1

Download annotations/find similar RTs

Seq: AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome (8700819 bp)
Overview 1 RT 1: 96544-103258 bp 2 RT 2: 1278241-1283978 bp 3 RT 3: 1830987-1836427 bp 4 RT 4: 2766672-2773462 bp 5 RT 5: 3081991-3089542 bp 6 RT 6: 7697728-7703377 bp 7 RT 7: 7730888-7748928 bp 8 RT 8: 8485737-8491978 bp 9 RT 9: 8606844-8612238 bp Neighborhood of RT #1 [96544, 103305] M48_Ste24p_like DinG RVT_N RVT-GII McrA DUF2839 DUF1815 Neighborhood of RT #2 [1278241, 1283992] COG1340 GlpG RVT_N RVT-GII GIIM McrA InsQ Y1_Tnp Neighborhood of RT #3 [1830987, 1836459] HyaB RVT_N RVT-GII GIIM McrA HyaB HyaA Neighborhood of RT #4 [2766672, 2773464] clpC RVT-Retrons sigpep_I_bact ComEA Neighborhood of RT #5 [3081991, 3089556] KOG1130 TPR TPR_12 TPR_12 COG4995 RVT_N RVT-GII GIIM McrA YybH Neighborhood of RT #6 [7697728, 7703436] fghA_ester_D RVT_N RVT-GII GIIM McrA TPR TPR TPR TPR Neighborhood of RT #7 [7730888, 7749203] PRK12497 InsQ RVT_N RVT-GII GIIM McrA InsQ KOG4626 B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT_N RVT-GII GIIM McrA B_ant_repeat B_ant_repeat Neighborhood of RT #8 [8485737, 8491998] KOG1454 Hydrolase_4 RVT_N RVT-GII GIIM McrA COG4941 Neighborhood of RT #9 [8606844, 8612240] PinE RVT-GII McrA psbA Feature: gene Location: 96544-97506 bp Feature: domain Description: M48_Ste24p_like Location: 96697-97333 bp Feature: domain Description: M48_Ste24p_like Location: 96697-97333 bp Feature: gene Location: 97632-99209 bp Feature: domain Description: DinG Location: 97674-99180 bp Feature: domain Description: DinG Location: 97674-991 80 bp Feature: gene Location: 100075-101649 bp Feature: RT Description: RVT_N Location: 100111-100351 bp Feature: RT Description: RVT_N Location: 1 001 1 1 -1 00351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100408-101065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00408-1 01 065 bp Feature: domain Description: McrA Location: 101296-101626 bp Feature: domain Description: McrA Location: 1 01 296-1 01 626 bp Feature: gene Location: 101703-101927 bp Feature: domain Description: DUF2839 Location: 101739-101916 bp Feature: domain Description: DUF2839 Location: 1 01 739-1 01 91 6 bp Feature: gene Location: 102958-103305 bp Feature: domain Description: DUF1815 Location: 102964-103258 bp Feature: domain Description: DUF1 81 5 Location: 1 02964-1 03258 bp Feature: gene Location: 1278241-1278471 bp Feature: domain Description: COG1340 Location: 1278253-1278403 bp Feature: domain Description: COG1 340 Location: 1 278253-1 278403 bp Feature: gene Location: 1279086-1279760 bp Feature: domain Description: GlpG Location: 1279092-1279749 bp Feature: domain Description: GlpG Location: 1 279092-1 279749 bp Feature: gene Location: 1280477-1282366 bp Feature: RT Description: RVT_N Location: 1280591-1280837 bp Feature: RT Description: RVT_N Location: 1 280591 -1 280837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280879-1281575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 280879-1 281 575 bp Feature: domain Description: GIIM Note: maturase Location: 1281662-1281887 bp Feature: domain Description: GIIM Note: maturase Location: 1 281 662-1 281 887 bp Feature: domain Description: McrA Location: 1281959-1282280 bp Feature: domain Description: McrA Location: 1 281 959-1 282280 bp Feature: gene Location: 1282956-1283528 bp Feature: domain Description: InsQ Location: 1282959-1283505 bp Feature: domain Description: InsQ Location: 1 282959-1 283505 bp Feature: gene Location: 1283588-1283992 bp Feature: domain Description: Y1_Tnp Location: 1283615-1283978 bp Feature: domain Description: Y1 _Tnp Location: 1 28361 5-1 283978 bp Feature: gene Location: 1830987-1831196 bp Feature: gene Location: 1831317-1832072 bp Feature: domain Description: HyaB Location: 1831323-1832061 bp Feature: domain Description: HyaB Location: 1 831 323-1 832061 bp Feature: gene Location: 1832175-1834064 bp Feature: RT Description: RVT_N Location: 1832289-1832535 bp Feature: RT Description: RVT_N Location: 1 832289-1 832535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832577-1833273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832577-1 833273 bp Feature: domain Description: GIIM Note: maturase Location: 1833360-1833585 bp Feature: domain Description: GIIM Note: maturase Location: 1 833360-1 833585 bp Feature: domain Description: McrA Location: 1833657-1833978 bp Feature: domain Description: McrA Location: 1 833657-1 833978 bp Feature: gene Location: 1834654-1835421 bp Feature: domain Description: HyaB Location: 1834666-1835389 bp Feature: domain Description: HyaB Location: 1 834666-1 835389 bp Feature: gene Location: 1835545-1836459 bp Feature: domain Description: HyaA Location: 1835548-1836427 bp Feature: domain Description: HyaA Location: 1 835548-1 836427 bp Feature: gene Location: 2766672-2769140 bp Feature: domain Description: clpC Location: 2766675-2769102 bp Feature: domain Description: clpC Location: 2766675-27691 02 bp Feature: gene Location: 2769250-2770158 bp Feature: gene Location: 2770189-2771262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2770372-2770978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2770372-2770978 bp Feature: gene Location: 2772150-2772722 bp Feature: domain Description: sigpep_I_bact Location: 2772273-2772705 bp Feature: domain Description: sigpep_I_bact Location: 2772273-2772705 bp Feature: gene Location: 2772931-2773464 bp Feature: domain Description: ComEA Location: 2772994-2773462 bp Feature: domain Description: ComEA Location: 2772994-2773462 bp Feature: gene Location: 3081991-3083835 bp Feature: domain Description: KOG1130 Location: 3082987-3083527 bp Feature: domain Description: KOG1 1 30 Location: 3082987-3083527 bp Feature: domain Description: TPR Location: 3083575-3083620 bp Feature: domain Description: TPR Location: 3083575-3083620 bp Feature: gene Location: 3083908-3085797 bp Feature: domain Description: TPR_12 Location: 3083992-3084190 bp Feature: domain Description: TPR_1 2 Location: 3083992-30841 90 bp Feature: domain Description: TPR_12 Location: 3084220-3084403 bp Feature: domain Description: TPR_1 2 Location: 3084220-3084403 bp Feature: domain Description: COG4995 Location: 3084514-3085792 bp Feature: domain Description: COG4995 Location: 308451 4-3085792 bp Feature: gene Location: 3086334-3088223 bp Feature: RT Description: RVT_N Location: 3086448-3086694 bp Feature: RT Description: RVT_N Location: 3086448-3086694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3086736-3087432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3086736-3087432 bp Feature: domain Description: GIIM Note: maturase Location: 3087519-3087744 bp Feature: domain Description: GIIM Note: maturase Location: 308751 9-3087744 bp Feature: domain Description: McrA Location: 3087816-3088137 bp Feature: domain Description: McrA Location: 308781 6-30881 37 bp Feature: gene Location: 3088220-3088375 bp Feature: gene Location: 3089080-3089556 bp Feature: domain Description: YybH Location: 3089197-3089542 bp Feature: domain Description: YybH Location: 30891 97-3089542 bp Feature: gene Location: 7697728-7698537 bp Feature: domain Description: fghA_ester_D Location: 7697743-7698517 bp Feature: domain Description: fghA_ester_D Location: 7697743-769851 7 bp Feature: gene Location: 7698954-7699100 bp Feature: gene Location: 7699127-7701016 bp Feature: RT Description: RVT_N Location: 7699241-7699487 bp Feature: RT Description: RVT_N Location: 7699241 -7699487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7699529-7700225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7699529-7700225 bp Feature: domain Description: GIIM Note: maturase Location: 7700312-7700537 bp Feature: domain Description: GIIM Note: maturase Location: 770031 2-7700537 bp Feature: domain Description: McrA Location: 7700630-7700903 bp Feature: domain Description: McrA Location: 7700630-7700903 bp Feature: gene Location: 7701060-7701170 bp Feature: gene Location: 7701559-7703436 bp Feature: domain Description: TPR Location: 7702297-7702585 bp Feature: domain Description: TPR Location: 7702297-7702585 bp Feature: domain Description: TPR Location: 7702756-7702969 bp Feature: domain Description: TPR Location: 7702756-7702969 bp Feature: domain Description: TPR Location: 7702978-7703263 bp Feature: domain Description: TPR Location: 7702978-7703263 bp Feature: domain Description: TPR Location: 7703284-7703377 bp Feature: domain Description: TPR Location: 7703284-7703377 bp Feature: gene Location: 7730888-7731370 bp Feature: domain Description: PRK12497 Location: 7730912-7731350 bp Feature: domain Description: PRK1 2497 Location: 773091 2-7731 350 bp Feature: gene Location: 7731502-7731972 bp Feature: domain Description: InsQ Location: 7731508-7731847 bp Feature: domain Description: InsQ Location: 7731 508-7731 847 bp Feature: gene Location: 7732523-7734256 bp Feature: RT Description: RVT_N Location: 7732541-7732787 bp Feature: RT Description: RVT_N Location: 7732541 -7732787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7732829-7733528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7732829-7733528 bp Feature: domain Description: GIIM Note: maturase Location: 7733630-7733855 bp Feature: domain Description: GIIM Note: maturase Location: 7733630-7733855 bp Feature: domain Description: McrA Location: 7733936-7734206 bp Feature: domain Description: McrA Location: 7733936-7734206 bp Feature: gene Location: 7734283-7735251 bp Feature: domain Description: InsQ Location: 7734385-7735132 bp Feature: domain Description: InsQ Location: 7734385-77351 32 bp Feature: gene Location: 7735303-7735617 bp Feature: gene Location: 7737307-7738473 bp Feature: domain Description: KOG4626 Location: 7737541-7738180 bp Feature: domain Description: KOG4626 Location: 7737541 -77381 80 bp Feature: gene Location: 7739145-7743176 bp Feature: domain Description: B_ant_repeat Location: 7740000-7740132 bp Feature: domain Description: B_ant_repeat Location: 7740000-77401 32 bp Feature: domain Description: B_ant_repeat Location: 7740540-7740639 bp Feature: domain Description: B_ant_repeat Location: 7740540-7740639 bp Feature: domain Description: B_ant_repeat Location: 7741044-7741155 bp Feature: domain Description: B_ant_repeat Location: 7741 044-7741 1 55 bp Feature: domain Description: B_ant_repeat Location: 7741557-7741662 bp Feature: domain Description: B_ant_repeat Location: 7741 557-7741 662 bp Feature: domain Description: B_ant_repeat Location: 7742055-7742166 bp Feature: domain Description: B_ant_repeat Location: 7742055-77421 66 bp Feature: domain Description: B_ant_repeat Location: 7742715-7742832 bp Feature: domain Description: B_ant_repeat Location: 774271 5-7742832 bp Feature: gene Location: 7743188-7744765 bp Feature: RT Description: RVT_N Location: 7743227-7743461 bp Feature: RT Description: RVT_N Location: 7743227-7743461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7743518-7744175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774351 8-77441 75 bp Feature: domain Description: GIIM Note: maturase Location: 7744232-7744412 bp Feature: domain Description: GIIM Note: maturase Location: 7744232-774441 2 bp Feature: domain Description: McrA Location: 7744412-7744754 bp Feature: domain Description: McrA Location: 774441 2-7744754 bp Feature: gene Location: 7744961-7745194 bp Feature: gene Location: 7745748-7749203 bp Feature: domain Description: B_ant_repeat Location: 7747686-7747794 bp Feature: domain Description: B_ant_repeat Location: 7747686-7747794 bp Feature: domain Description: B_ant_repeat Location: 7748802-7748928 bp Feature: domain Description: B_ant_repeat Location: 7748802-7748928 bp Feature: gene Location: 8485737-8486603 bp Feature: domain Description: KOG1454 Location: 8485854-8486595 bp Feature: domain Description: KOG1 454 Location: 8485854-8486595 bp Feature: gene Location: 8486633-8487730 bp Feature: domain Description: Hydrolase_4 Location: 8486801-8487161 bp Feature: domain Description: Hydrolase_4 Location: 8486801 -84871 61 bp Feature: gene Location: 8488278-8489843 bp Feature: RT Description: RVT_N Location: 8488317-8488557 bp Feature: RT Description: RVT_N Location: 848831 7-8488557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8488608-8489265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8488608-8489265 bp Feature: domain Description: GIIM Note: maturase Location: 8489322-8489517 bp Feature: domain Description: GIIM Note: maturase Location: 8489322-848951 7 bp Feature: domain Description: McrA Location: 8489529-8489820 bp Feature: domain Description: McrA Location: 8489529-8489820 bp Feature: gene Location: 8490059-8490424 bp Feature: gene Location: 8490730-8491998 bp Feature: domain Description: COG4941 Location: 8490763-8491978 bp Feature: domain Description: COG4941 Location: 8490763-8491 978 bp Feature: gene Location: 8606844-8607089 bp Feature: domain Description: PinE Location: 8606883-8607084 bp Feature: domain Description: PinE Location: 8606883-8607084 bp Feature: gene Location: 8607101-8607451 bp Feature: gene Location: 8607559-8608722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8607580-8608138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8607580-86081 38 bp Feature: domain Description: McrA Location: 8608372-8608693 bp Feature: domain Description: McrA Location: 8608372-8608693 bp Feature: gene Location: 8609091-8611040 bp Feature: gene Location: 8611155-8612240 bp Feature: domain Description: psbA Location: 8611158-8612238 bp Feature: domain Description: psbA Location: 861 1 1 58-861 2238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), DUF2839 (pfam10999), DUF1815 (pfam08844), M48_Ste24p_like (cd07328), DinG (COG1199), COG1340 (Uncharacterized coiled-coil protein, contains DUF342 domain ), GlpG (COG0705), GIIM (pfam08388)
InsQ (COG0675), Y1_Tnp (pfam01797), HyaB (COG0374), HyaA (COG1740), clpC, RVT-Retrons, sigpep_I_bact (TIGR02227), ComEA (COG1555), KOG1130 (KOG1130, Predicted G-alpha GTPase interaction protein, contains GoLoco domain ), TPR (smart00028)
TPR_12 (pfam13424), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), YybH (COG4319), fghA_ester_D (TIGR02821), PRK12497 (YraN family protein), KOG4626 (KOG4626, O-linked N-acetylglucosamine transferase OGT ), B_ant_repeat (TIGR01451), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), Hydrolase_4 (pfam12146), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain )
PinE (COG1961), psbA (TIGR01151)

Seq: AP018249.1 Tolypothrix tenuis PCC 7101 plasmid plasmid1 DNA, complete genome (292325 bp)
Overview 1 RT 1: 288925-292179 bp Neighborhood of RT #1 [288925, 292179] ParM_like RVT_N RVT-GII GIIM McrA Feature: gene Location: 288925-289230 bp Feature: gene Location: 289253-290161 bp Feature: domain Description: ParM_like Location: 289424-290126 bp Feature: domain Description: ParM_like Location: 2 8942 4-2 9012 6 bp Feature: gene Location: 290173-291750 bp Feature: RT Description: RVT_N Location: 290212-290446 bp Feature: RT Description: RVT_N Location: 2 902 12 -2 90446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290503-291160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 90503-2 91160 bp Feature: domain Description: GIIM Note: maturase Location: 291217-291397 bp Feature: domain Description: GIIM Note: maturase Location: 2 912 17-2 91397 bp Feature: domain Description: McrA Location: 291397-291739 bp Feature: domain Description: McrA Location: 2 91397-2 91739 bp Feature: gene Location: 291946-292179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AP018250.1 Tolypothrix tenuis PCC 7101 plasmid plasmid2 DNA, complete genome (216164 bp)
Overview 1 RT 1: 75834-81488 bp Neighborhood of RT #1 [75834, 81565] OmpR MFS_MJ1317_like RVT_N RVT-GII McrA ycf46 Feature: gene Location: 75834-76508 bp Feature: domain Description: OmpR Location: 75837-76503 bp Feature: domain Description: OmpR Location: 7583 7-76503 bp Feature: gene Location: 76617-76853 bp Feature: domain Description: MFS_MJ1317_like Location: 76629-76845 bp Feature: domain Description: MFS_MJ13 17_like Location: 76629-76845 bp Feature: gene Location: 77223-78797 bp Feature: RT Description: RVT_N Location: 77259-77505 bp Feature: RT Description: RVT_N Location: 77259-77505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77556-78213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77556-78213 bp Feature: domain Description: McrA Location: 78447-78768 bp Feature: domain Description: McrA Location: 78447-78768 bp Feature: gene Location: 79327-79728 bp Feature: gene Location: 79898-81565 bp Feature: domain Description: ycf46 Location: 80273-81488 bp Feature: domain Description: ycf46 Location: 80273 -81488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), MFS_MJ1317_like (cd17370), RVT_N (pfam13655), RVT-GII, McrA (COG4058), ycf46 (CHL00195)