myRT

myRT report for GCA_002368315.1_ASM236831v1

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Seq: AP018299.1 Fischerella sp. NIES-4106 plasmid plasmid1 DNA, nearly complete genome (550801 bp)
Overview 1 RT 1: 518247-525044 bp Neighborhood of RT #1 [518247, 525088] INT_FimBE_like DUF3102 RVT_N RVT-GII GIIM HNHc COG5421 Feature: gene Location: 518247-518867 bp Ori: BAZ70885.1 Feature: domain Description: INT_FimBE_like Location: 518331-518853 bp Feature: domain Description: INT_FimBE_like Location: 51 8331 -51 8853 bp Feature: gene Location: 519518-520489 bp Ori: BAZ70886.1 Feature: domain Description: DUF3102 Location: 519701-519836 bp Feature: domain Description: DUF31 02 Location: 51 9701 -51 9836 bp Feature: gene Location: 521520-523352 bp Ori: BAZ70887.1 Feature: domain Description: RVT_N Location: 521568-521814 bp Feature: domain Description: RVT_N Location: 521 568-521 81 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521856-522531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 856-522531 bp Feature: domain Description: GIIM Note: maturase Location: 522636-522867 bp Feature: domain Description: GIIM Note: maturase Location: 522636-522867 bp Feature: domain Description: HNHc Note: nucleases Location: 523068-523227 bp Feature: domain Description: HNHc Note: nucleases Location: 523068-523227 bp Feature: gene Location: 523422-523532 bp Feature: gene Location: 524471-525088 bp Ori: BAZ70889.1 Feature: domain Description: COG5421 Location: 524507-525044 bp Feature: domain Description: COG5421 Location: 524507-525044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_FimBE_like (cd01197), DUF3102 (pfam11300), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG5421 (Transposase )

Seq: AP018301.1 Fischerella sp. NIES-4106 plasmid plasmid3 DNA, complete genome (78672 bp)
Overview 1 RT 1: 383-4182 bp Neighborhood of RT #1 [383, 4196] RVT-DGRs Avd_like YfmG Feature: gene Location: 383-754 bp Feature: gene Location: 1799-2857 bp Ori: BAZ71201.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2006-2651 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 006-2 651 bp Feature: gene Location: 2880-3224 bp Ori: BAZ71202.1 Feature: domain Description: Avd_like Location: 2898-3204 bp Feature: domain Description: Avd_like Location: 2 898-32 04 bp Feature: gene Location: 3336-4196 bp Ori: BAZ71203.1 Feature: domain Description: YfmG Location: 3375-4182 bp Feature: domain Description: YfmG Location: 3375-4182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: AP018298.1 Fischerella sp. NIES-4106 DNA, nearly complete genome (6177244 bp)
Overview 1 RT 1: 608369-612876 bp 2 RT 2: 3136416-3142114 bp 3 RT 3: 3628018-3636591 bp 4 RT 4: 4094575-4101180 bp 5 RT 5: 4745714-4752429 bp Neighborhood of RT #1 [608369, 613001] PRK03619 group_II_RT_mat RVT-UG19 Uma2 Neighborhood of RT #2 [3136416, 3142245] AarF RVT-DGRs AMP_N Prolidase Uma2 Neighborhood of RT #3 [3628018, 3636650] CAP_ED CAP_ED RVT_N RVT-GII GIIM HNHc PRK05443 Neighborhood of RT #4 [4094575, 4101215] PinE Zn_ribbon_recom HTH_17 RVT-GII GIIM McrA COG3464 COG3464 HsdM_N Neighborhood of RT #5 [4745714, 4752476] TPR_12 TPR_12 TPR_10 TPR_12 TPR_10 TPR_12 TPR_12 TPR_10 TPR_12 CHAT DUF4384 RVT-CRISPR Cas_Cas1 DDE_Tnp_4 HTH_Tnp_4 Feature: gene Location: 608369-609049 bp Ori: BAZ65786.1 Feature: domain Description: PRK03619 Location: 608372-609023 bp Feature: domain Description: PRK03 619 Location: 6083 72-609023 bp Feature: gene Location: 609146-609349 bp Feature: gene Location: 609521-611677 bp Ori: BAZ65788.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 609569-609827 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 609569-609827 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 609902-610379 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 609902-6103 79 bp Feature: gene Location: 611718-612071 bp Feature: gene Location: 612372-613001 bp Ori: BAZ65790.1 Feature: domain Description: Uma2 Location: 612396-612876 bp Feature: domain Description: Uma2 Location: 6123 96-612876 bp Feature: gene Location: 3136416-3136790 bp Feature: gene Location: 3136987-3138696 bp Ori: BAZ67992.1 Feature: domain Description: AarF Location: 3137023-3138520 bp Feature: domain Description: AarF Location: 3 13 7023 -3 13 8520 bp Feature: gene Location: 3139164-3139772 bp Ori: BAZ67993.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3139371-3139590 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 13 93 71-3 13 9590 bp Feature: gene Location: 3140053-3141435 bp Ori: BAZ67994.1 Feature: domain Description: AMP_N Location: 3140092-3140419 bp Feature: domain Description: AMP_N Location: 3 140092-3 140419 bp Feature: domain Description: Prolidase Location: 3140566-3141385 bp Feature: domain Description: Prolidase Location: 3 140566-3 1413 85 bp Feature: gene Location: 3141604-3142245 bp Ori: BAZ67995.1 Feature: domain Description: Uma2 Location: 3141655-3142114 bp Feature: domain Description: Uma2 Location: 3 141655-3 142114 bp Feature: gene Location: 3628018-3629430 bp Ori: BAZ68413.1 Feature: domain Description: CAP_ED Location: 3628333-3628651 bp Feature: domain Description: CAP_ED Location: 3 6283 3 3 -3 628651 bp Feature: gene Location: 3629673-3631088 bp Ori: BAZ68414.1 Feature: domain Description: CAP_ED Location: 3629982-3630312 bp Feature: domain Description: CAP_ED Location: 3 629982-3 63 03 12 bp Feature: gene Location: 3631197-3633029 bp Ori: BAZ68415.1 Feature: domain Description: RVT_N Location: 3631245-3631491 bp Feature: domain Description: RVT_N Location: 3 63 1245-3 63 1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3631533-3632208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 63 153 3 -3 63 2208 bp Feature: domain Description: GIIM Note: maturase Location: 3632313-3632544 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 23 13 -3 63 2544 bp Feature: domain Description: HNHc Note: nucleases Location: 3632745-3632904 bp Feature: domain Description: HNHc Note: nucleases Location: 3 63 2745-3 63 2904 bp Feature: gene Location: 3633099-3633209 bp Feature: gene Location: 3634434-3636650 bp Ori: BAZ68417.1 Feature: domain Description: PRK05443 Location: 3634452-3636591 bp Feature: domain Description: PRK05443 Location: 3 63 4452-3 63 6591 bp Feature: gene Location: 4094575-4096653 bp Ori: BAZ68793.1 Feature: domain Description: PinE Location: 4094614-4095250 bp Feature: domain Description: PinE Location: 4094614-4095250 bp Feature: domain Description: Zn_ribbon_recom Location: 4095571-4095748 bp Feature: domain Description: Zn_ribbon_recom Location: 4095571-4095748 bp Feature: domain Description: HTH_17 Location: 4096468-4096585 bp Feature: domain Description: HTH_17 Location: 4096468-4096585 bp Feature: gene Location: 4096659-4097003 bp Feature: gene Location: 4097123-4098574 bp Ori: BAZ68795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097144-4097771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4097144-4097771 bp Feature: domain Description: GIIM Note: maturase Location: 4097870-4098104 bp Feature: domain Description: GIIM Note: maturase Location: 4097870-4098104 bp Feature: domain Description: McrA Location: 4098203-4098473 bp Feature: domain Description: McrA Location: 4098203 -4098473 bp Feature: gene Location: 4098863-4100281 bp Ori: BAZ68796.1 Feature: domain Description: COG3464 Location: 4099088-4099376 bp Feature: domain Description: COG3 464 Location: 4099088-40993 76 bp Feature: domain Description: COG3464 Location: 4099505-4100276 bp Feature: domain Description: COG3 464 Location: 4099505-4100276 bp Feature: gene Location: 4100934-4101215 bp Ori: BAZ68797.1 Feature: domain Description: HsdM_N Location: 4100961-4101180 bp Feature: domain Description: HsdM_N Location: 4100961-4101180 bp Feature: gene Location: 4745714-4748950 bp Ori: BAZ69329.1 Feature: domain Description: TPR_12 Location: 4745771-4745957 bp Feature: domain Description: TPR_12 Location: 4745771-4745957 bp Feature: domain Description: TPR_12 Location: 4745981-4746206 bp Feature: domain Description: TPR_12 Location: 4745981-4746206 bp Feature: domain Description: TPR_10 Location: 4746239-4746356 bp Feature: domain Description: TPR_10 Location: 474623 9-47463 56 bp Feature: domain Description: TPR_12 Location: 4746362-4746587 bp Feature: domain Description: TPR_12 Location: 47463 62-4746587 bp Feature: domain Description: TPR_10 Location: 4746614-4746737 bp Feature: domain Description: TPR_10 Location: 4746614-474673 7 bp Feature: domain Description: TPR_12 Location: 4746737-4746962 bp Feature: domain Description: TPR_12 Location: 474673 7-4746962 bp Feature: domain Description: TPR_12 Location: 4746989-4747202 bp Feature: domain Description: TPR_12 Location: 4746989-4747202 bp Feature: domain Description: TPR_10 Location: 4747244-4747367 bp Feature: domain Description: TPR_10 Location: 4747244-47473 67 bp Feature: domain Description: TPR_12 Location: 4747367-4747583 bp Feature: domain Description: TPR_12 Location: 47473 67-4747583 bp Feature: domain Description: CHAT Location: 4748327-4748942 bp Feature: domain Description: CHAT Location: 47483 27-4748942 bp Feature: gene Location: 4749901-4750209 bp Ori: BAZ69330.1 Feature: domain Description: DUF4384 Location: 4749904-4750048 bp Feature: domain Description: DUF43 84 Location: 4749904-4750048 bp Feature: gene Location: 4750291-4751319 bp Ori: BAZ69331.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4750294-4750495 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4750294-4750495 bp Feature: domain Description: Cas_Cas1 Location: 4750714-4751278 bp Feature: domain Description: Cas_Cas1 Location: 4750714-4751278 bp Feature: gene Location: 4751638-4751955 bp Ori: BAZ69332.1 Feature: domain Description: DDE_Tnp_4 Location: 4751656-4751941 bp Feature: domain Description: DDE_Tnp_4 Location: 4751656-4751941 bp Feature: gene Location: 4752096-4752476 bp Ori: BAZ69333.1 Feature: domain Description: HTH_Tnp_4 Location: 4752279-4752429 bp Feature: domain Description: HTH_Tnp_4 Location: 4752279-4752429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03619 (phosphoribosylformylglycinamidine synthase subunit PurQ), group_II_RT_mat (TIGR04416), RVT-UG19, Uma2 (pfam05685), AarF (COG0661), RVT-DGRs, AMP_N (smart01011), Prolidase (cd01087), CAP_ED (cl00047), RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05443 (polyphosphate kinase; Provisional), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), McrA (COG4058), COG3464 (Transposase ), HsdM_N (pfam12161)
TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), DUF4384 (pfam14326), RVT-CRISPR, Cas_Cas1 (pfam01867), DDE_Tnp_4 (pfam13359), HTH_Tnp_4 (pfam13613)

Seq: AP018300.1 Fischerella sp. NIES-4106 plasmid plasmid2 DNA, complete genome (312401 bp)
Overview 1 RT 1: 110306-123412 bp 2 RT 2: 156687-162076 bp 3 RT 3: 247222-257290 bp Neighborhood of RT #1 [110306, 123412] Mob_Pre Mob_Pre DUF3991 RVT-GII RVT_N RVT-GII YkfC HNHc ycf46 VirD4 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [156687, 162076] Sigma70_r1_2 RVT_N RVT-GII YkfC HNHc RVT-GII GIIM ZIP_Gal4-like_1 Neighborhood of RT #3 [247222, 257451] DDE_5 RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc RPE65 Feature: gene Location: 110306-111952 bp Ori: BAZ71016.1 Feature: domain Description: Mob_Pre Location: 110312-110879 bp Feature: domain Description: Mob_Pre Location: 110312-110879 bp Feature: domain Description: Mob_Pre Location: 111242-111317 bp Feature: domain Description: Mob_Pre Location: 11124 2-111317 bp Feature: domain Description: DUF3991 Location: 111416-111548 bp Feature: domain Description: DUF3991 Location: 1114 16-11154 8 bp Feature: gene Location: 112178-112663 bp Feature: gene Location: 112660-112902 bp Ori: BAZ71018.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112666-112807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112666-112807 bp Feature: gene Location: 113377-115032 bp Ori: BAZ71019.1 Feature: domain Description: RVT_N Location: 113428-113671 bp Feature: domain Description: RVT_N Location: 1134 28-113671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113713-114340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113713-114 34 0 bp Feature: domain Description: YkfC Location: 114562-114643 bp Feature: domain Description: YkfC Location: 114 562-114 64 3 bp Feature: domain Description: HNHc Note: nucleases Location: 114850-115009 bp Feature: domain Description: HNHc Note: nucleases Location: 114 850-115009 bp Feature: gene Location: 115436-117055 bp Ori: BAZ71020.1 Feature: domain Description: ycf46 Location: 115448-116966 bp Feature: domain Description: ycf4 6 Location: 1154 4 8-116966 bp Feature: gene Location: 117063-118469 bp Feature: gene Location: 118565-118894 bp Feature: gene Location: 119095-120357 bp Ori: BAZ71023.1 Feature: domain Description: VirD4 Location: 119098-120190 bp Feature: domain Description: VirD4 Location: 119098-120190 bp Feature: gene Location: 120502-122163 bp Ori: BAZ71024.1 Feature: domain Description: RVT_N Location: 120514-120760 bp Feature: domain Description: RVT_N Location: 120514 -120760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120802-121477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120802-1214 77 bp Feature: domain Description: GIIM Note: maturase Location: 121555-121789 bp Feature: domain Description: GIIM Note: maturase Location: 121555-121789 bp Feature: domain Description: HNHc Note: nucleases Location: 121975-122116 bp Feature: domain Description: HNHc Note: nucleases Location: 121975-122116 bp Feature: gene Location: 122557-122754 bp Feature: gene Location: 122744-123412 bp Feature: gene Location: 156687-157085 bp Feature: gene Location: 157566-157718 bp Ori: BAZ71054.1 Feature: domain Description: Sigma70_r1_2 Location: 157572-157650 bp Feature: domain Description: Sigma70_r1_2 Location: 157572-157650 bp Feature: gene Location: 158089-159744 bp Ori: BAZ71055.1 Feature: domain Description: RVT_N Location: 158140-158383 bp Feature: domain Description: RVT_N Location: 15814 0-158383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158425-159052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584 25-159052 bp Feature: domain Description: YkfC Location: 159274-159355 bp Feature: domain Description: YkfC Location: 159274 -159355 bp Feature: domain Description: HNHc Note: nucleases Location: 159562-159721 bp Feature: domain Description: HNHc Note: nucleases Location: 159562-159721 bp Feature: gene Location: 160219-160602 bp Ori: BAZ71056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160225-160366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160225-160366 bp Feature: domain Description: GIIM Note: maturase Location: 160426-160549 bp Feature: domain Description: GIIM Note: maturase Location: 1604 26-16054 9 bp Feature: gene Location: 161355-161585 bp Ori: BAZ71057.1 Feature: domain Description: ZIP_Gal4-like_1 Location: 161514-161580 bp Feature: domain Description: ZIP_Gal4 -like_1 Location: 161514 -161580 bp Feature: gene Location: 161879-162076 bp Feature: gene Location: 247222-247716 bp Ori: BAZ71144.1 Feature: domain Description: DDE_5 Location: 247348-247510 bp Feature: domain Description: DDE_5 Location: 24 734 8-24 7510 bp Feature: gene Location: 247829-248173 bp Feature: gene Location: 248956-250788 bp Ori: BAZ71146.1 Feature: domain Description: RVT_N Location: 249004-249250 bp Feature: domain Description: RVT_N Location: 24 9004 -24 9250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249292-249967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 9292-24 9967 bp Feature: domain Description: GIIM Note: maturase Location: 250072-250303 bp Feature: domain Description: GIIM Note: maturase Location: 250072-250303 bp Feature: domain Description: HNHc Note: nucleases Location: 250504-250663 bp Feature: domain Description: HNHc Note: nucleases Location: 250504 -250663 bp Feature: gene Location: 250858-250968 bp Feature: gene Location: 252359-252469 bp Feature: gene Location: 252539-254371 bp Ori: BAZ71149.1 Feature: domain Description: RVT_N Location: 252587-252833 bp Feature: domain Description: RVT_N Location: 252587-252833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252875-253550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252875-253550 bp Feature: domain Description: GIIM Note: maturase Location: 253655-253886 bp Feature: domain Description: GIIM Note: maturase Location: 253655-253886 bp Feature: domain Description: HNHc Note: nucleases Location: 254087-254246 bp Feature: domain Description: HNHc Note: nucleases Location: 254 087-254 24 6 bp Feature: gene Location: 255030-255401 bp Feature: gene Location: 255427-257451 bp Ori: BAZ71151.1 Feature: domain Description: RPE65 Location: 255511-257290 bp Feature: domain Description: RPE65 Location: 255511-257290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), DUF3991 (pfam13154), RVT-GII, RVT_N (pfam13655), YkfC (COG3344), HNHc (smart00507), ycf46 (CHL00195), VirD4 (COG3505), GIIM (pfam08388), Sigma70_r1_2 (pfam00140)
ZIP_Gal4-like_1 (cd14724), DDE_5 (pfam13546), RPE65 (pfam03055)