myRT

myRT report for GCA_002368435.1_ASM236843v1

Download annotations/find similar RTs

Seq: AP018264.1 Scytonema sp. NIES-4073 plasmid plasmid1 DNA, complete genome (234762 bp)
Overview 1 RT 1: 165784-169614 bp Neighborhood of RT #1 [165784, 169614] RVT_N RVT-GII GIIM McrA Feature: gene Location: 165784-165924 bp Feature: gene Location: 166045-166626 bp Feature: gene Location: 167122-168978 bp Feature: RT Description: RVT_N Location: 167269-167515 bp Feature: RT Description: RVT_N Location: 1 67269-1 6751 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167557-168235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67557-1 68235 bp Feature: domain Description: GIIM Note: maturase Location: 168337-168568 bp Feature: domain Description: GIIM Note: maturase Location: 1 68337-1 68568 bp Feature: domain Description: McrA Location: 168652-168919 bp Feature: domain Description: McrA Location: 1 68652-1 6891 9 bp Feature: gene Location: 168958-169242 bp Feature: gene Location: 169279-169614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome (9448901 bp)
Overview 1 RT 1: 1004815-1009825 bp 2 RT 2: 2281462-2286850 bp 3 RT 3: 3875964-3879102 bp 4 RT 4: 5888049-5893255 bp 5 RT 5: 6748657-6756861 bp 6 RT 6: 6810774-6818040 bp 7 RT 7: 7199445-7204326 bp 8 RT 8: 8604684-8609698 bp Neighborhood of RT #1 [1004815, 1009825] HTH_32 RVT-GII RVT-GII Neighborhood of RT #2 [2281462, 2287107] KOG2565 InsQ RVT_N RVT-GII GIIM McrA InsQ Neighborhood of RT #3 [3875964, 3879102] RVT_N RVT-GII McrA Neighborhood of RT #4 [5888049, 5893287] DDE_3 HTH_32 RVT_N RVT-GII GIIM McrA InsQ HTH_26 GrpE Neighborhood of RT #5 [6748657, 6756861] PrtC DUF3656 PrtC InsQ RVT_N RVT-GII GIIM McrA InsQ Neighborhood of RT #6 [6810774, 6818129] PDDEXK_1 RVT_N RVT-GII KOG4768 AAA_16 7WD40 WD40 WD40 WD40 WD40 7WD40 Neighborhood of RT #7 [7199445, 7204326] InsQ RVT_N RVT-GII GIIM HNH Neighborhood of RT #8 [8604684, 8609718] YhhI SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT_N RVT-GII KOG4768 SPFH_eoslipins_u2 PG_binding_1 Feature: gene Location: 1004815-1005255 bp Feature: domain Description: HTH_32 Location: 1004992-1005229 bp Feature: domain Description: HTH_32 Location: 1004992 -10052 2 9 bp Feature: gene Location: 1005715-1005942 bp Feature: gene Location: 1005996-1006448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006020-1006158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100602 0-1006158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006161-1006326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006161-100632 6 bp Feature: gene Location: 1008260-1008538 bp Feature: gene Location: 1008677-1009825 bp Feature: gene Location: 2281462-2282841 bp Feature: domain Description: KOG2565 Location: 2281645-2282818 bp Feature: domain Description: KOG2 565 Location: 2 2 81645-2 2 82 818 bp Feature: gene Location: 2283226-2283849 bp Feature: domain Description: InsQ Location: 2283229-2283781 bp Feature: domain Description: InsQ Location: 2 2 832 2 9-2 2 83781 bp Feature: gene Location: 2284401-2286272 bp Feature: RT Description: RVT_N Location: 2284509-2284755 bp Feature: RT Description: RVT_N Location: 2 2 84509-2 2 84755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2284797-2285481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 84797-2 2 85481 bp Feature: domain Description: GIIM Note: maturase Location: 2285568-2285793 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 85568-2 2 85793 bp Feature: domain Description: McrA Location: 2285892-2286219 bp Feature: domain Description: McrA Location: 2 2 85892 -2 2 862 19 bp Feature: gene Location: 2286269-2286499 bp Feature: gene Location: 2286595-2287107 bp Feature: domain Description: InsQ Location: 2286598-2286850 bp Feature: domain Description: InsQ Location: 2 2 86598-2 2 86850 bp Feature: gene Location: 3875964-3876179 bp Feature: gene Location: 3876273-3876473 bp Feature: gene Location: 3876718-3878262 bp Feature: RT Description: RVT_N Location: 3876754-3877000 bp Feature: RT Description: RVT_N Location: 3876754-3877000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3877051-3877678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3877051-3877678 bp Feature: domain Description: McrA Location: 3877912-3878233 bp Feature: domain Description: McrA Location: 3877912 -38782 33 bp Feature: gene Location: 3878484-3878687 bp Feature: gene Location: 3878818-3879102 bp Feature: gene Location: 5888049-5888699 bp Feature: domain Description: DDE_3 Location: 5888103-5888556 bp Feature: domain Description: DDE_3 Location: 5888103-5888556 bp Feature: gene Location: 5888720-5889184 bp Feature: domain Description: HTH_32 Location: 5888897-5889131 bp Feature: domain Description: HTH_32 Location: 5888897-5889131 bp Feature: gene Location: 5889286-5891157 bp Feature: RT Description: RVT_N Location: 5889394-5889640 bp Feature: RT Description: RVT_N Location: 5889394-5889640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5889682-5890366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5889682 -5890366 bp Feature: domain Description: GIIM Note: maturase Location: 5890453-5890678 bp Feature: domain Description: GIIM Note: maturase Location: 5890453-5890678 bp Feature: domain Description: McrA Location: 5890777-5891104 bp Feature: domain Description: McrA Location: 5890777-5891104 bp Feature: gene Location: 5891709-5892395 bp Feature: domain Description: InsQ Location: 5891718-5892324 bp Feature: domain Description: InsQ Location: 5891718-5892 32 4 bp Feature: gene Location: 5892613-5893287 bp Feature: domain Description: HTH_26 Location: 5892640-5892817 bp Feature: domain Description: HTH_2 6 Location: 5892 640-5892 817 bp Feature: domain Description: GrpE Location: 5892889-5893255 bp Feature: domain Description: GrpE Location: 5892 889-58932 55 bp Feature: gene Location: 6748657-6751299 bp Feature: domain Description: PrtC Location: 6748705-6749746 bp Feature: domain Description: PrtC Location: 6748705-6749746 bp Feature: domain Description: DUF3656 Location: 6749914-6750301 bp Feature: domain Description: DUF3656 Location: 6749914-6750301 bp Feature: domain Description: PrtC Location: 6750739-6751207 bp Feature: domain Description: PrtC Location: 6750739-67512 07 bp Feature: gene Location: 6751480-6752166 bp Feature: domain Description: InsQ Location: 6751489-6752089 bp Feature: domain Description: InsQ Location: 6751489-6752 089 bp Feature: gene Location: 6752718-6754589 bp Feature: RT Description: RVT_N Location: 6752826-6753072 bp Feature: RT Description: RVT_N Location: 6752 82 6-6753072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6753114-6753798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6753114-6753798 bp Feature: domain Description: GIIM Note: maturase Location: 6753885-6754110 bp Feature: domain Description: GIIM Note: maturase Location: 6753885-6754110 bp Feature: domain Description: McrA Location: 6754209-6754536 bp Feature: domain Description: McrA Location: 67542 09-6754536 bp Feature: gene Location: 6754623-6755252 bp Feature: domain Description: InsQ Location: 6754632-6755157 bp Feature: domain Description: InsQ Location: 6754632 -6755157 bp Feature: gene Location: 6755647-6756861 bp Feature: gene Location: 6810774-6811598 bp Feature: domain Description: PDDEXK_1 Location: 6810804-6811497 bp Feature: domain Description: PDDEXK_1 Location: 6810804-6811497 bp Feature: gene Location: 6811646-6811762 bp Feature: gene Location: 6812520-6814193 bp Feature: RT Description: RVT_N Location: 6812556-6812799 bp Feature: RT Description: RVT_N Location: 6812 556-6812 799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812844-6813543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6812 844-6813543 bp Feature: domain Description: KOG4768 Location: 6813636-6814047 bp Feature: domain Description: KOG4768 Location: 6813636-6814047 bp Feature: gene Location: 6814398-6814601 bp Feature: gene Location: 6814617-6818129 bp Feature: domain Description: AAA_16 Location: 6814773-6815142 bp Feature: domain Description: AAA_16 Location: 6814773-6815142 bp Feature: domain Description: 7WD40 Location: 6816192-6816918 bp Feature: domain Description: 7WD40 Location: 6816192 -6816918 bp Feature: domain Description: WD40 Location: 6816921-6817035 bp Feature: domain Description: WD40 Location: 681692 1-6817035 bp Feature: domain Description: WD40 Location: 6817044-6817155 bp Feature: domain Description: WD40 Location: 6817044-6817155 bp Feature: domain Description: WD40 Location: 6817170-6817284 bp Feature: domain Description: WD40 Location: 6817170-68172 84 bp Feature: domain Description: WD40 Location: 6817290-6817407 bp Feature: domain Description: WD40 Location: 68172 90-6817407 bp Feature: domain Description: 7WD40 Location: 6817419-6818040 bp Feature: domain Description: 7WD40 Location: 6817419-6818040 bp Feature: gene Location: 7199445-7199843 bp Feature: gene Location: 7199864-7201006 bp Feature: domain Description: InsQ Location: 7199933-7200947 bp Feature: domain Description: InsQ Location: 7199933-72 00947 bp Feature: gene Location: 7201857-7203581 bp Feature: RT Description: RVT_N Location: 7201911-7202154 bp Feature: RT Description: RVT_N Location: 72 01911-72 02 154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7202205-7202883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 02 2 05-72 02 883 bp Feature: domain Description: GIIM Note: maturase Location: 7202955-7203174 bp Feature: domain Description: GIIM Note: maturase Location: 72 02 955-72 03174 bp Feature: domain Description: HNH Note: nucleases Location: 7203426-7203561 bp Feature: domain Description: HNH Note: nucleases Location: 72 0342 6-72 03561 bp Feature: gene Location: 7203559-7203708 bp Feature: gene Location: 7203937-7204326 bp Feature: gene Location: 8604684-8605073 bp Feature: domain Description: YhhI Location: 8604888-8605029 bp Feature: domain Description: YhhI Location: 8604888-860502 9 bp Feature: gene Location: 8605320-8606624 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8605353-8605503 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8605353-8605503 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8605752-8605857 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8605752 -8605857 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8606172-8606571 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8606172 -8606571 bp Feature: gene Location: 8606659-8608332 bp Feature: RT Description: RVT_N Location: 8606695-8606938 bp Feature: RT Description: RVT_N Location: 8606695-8606938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8606983-8607682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8606983-8607682 bp Feature: domain Description: KOG4768 Location: 8607775-8608186 bp Feature: domain Description: KOG4768 Location: 8607775-8608186 bp Feature: gene Location: 8608926-8609243 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8608956-8609196 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 8608956-8609196 bp Feature: gene Location: 8609476-8609718 bp Feature: domain Description: PG_binding_1 Location: 8609530-8609698 bp Feature: domain Description: PG_binding_1 Location: 8609530-8609698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), InsQ (COG0675), RVT_N (pfam13655), GIIM (pfam08388), McrA (COG4058), DDE_3 (pfam13358), HTH_26 (pfam13443), GrpE (pfam01025)
PrtC (COG0826), DUF3656 (pfam12392), PDDEXK_1 (pfam12705), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), AAA_16 (pfam13191), 7WD40 (sd00039), WD40 (smart00320), HNH (pfam01844), YhhI (COG5433), SPFH_eoslipins_u2 (cd13438)
PG_binding_1 (pfam01471)

Seq: AP018266.1 Scytonema sp. NIES-4073 plasmid plasmid3 DNA, complete genome (59631 bp)
Overview 1 RT 1: 39139-46021 bp Neighborhood of RT #1 [39139, 46044] RVT_N RVT-GII McrA DUF4158 DDE_Tnp_Tn3 PinE Feature: gene Location: 39139-39675 bp Feature: gene Location: 39898-40482 bp Feature: gene Location: 40743-42305 bp Feature: RT Description: RVT_N Location: 40830-41070 bp Feature: RT Description: RVT_N Location: 4083 0-41070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41127-41721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41127-41721 bp Feature: domain Description: McrA Location: 41952-42285 bp Feature: domain Description: McrA Location: 41952-42285 bp Feature: gene Location: 42342-45290 bp Feature: domain Description: DUF4158 Location: 42351-42804 bp Feature: domain Description: DUF4158 Location: 423 51-42804 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 44082-45249 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 44082-45249 bp Feature: gene Location: 45430-46044 bp Feature: domain Description: PinE Location: 45442-46021 bp Feature: domain Description: PinE Location: 45442-46021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), PinE (COG1961)