myRT

myRT report for GCA_002369865.1_ASM236986v1

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Seq: NJPE01000012.1 Klebsiella pneumoniae strain SH1 kpn-17_S49_R2_001_contig_12, whole genome shotgun sequence (100238 bp)
Overview 1 RT 1: 17399-23661 bp Neighborhood of RT #1 [17399, 23661] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17399-18502 bp Feature: domain Description: STKc_PknB_like Location: 17531-17972 bp Feature: domain Description: STKc_PknB_like Location: 1 7531 -1 7972 bp Feature: gene Location: 18572-18814 bp Feature: gene Location: 19061-20161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19244-19772 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9244-1 9772 bp Feature: gene Location: 20276-22552 bp Feature: domain Description: AAA_15 Location: 20309-21317 bp Feature: domain Description: AAA_1 5 Location: 20309-21 31 7 bp Feature: gene Location: 23431-23661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NJPE01000086.1 Klebsiella pneumoniae strain SH1 kpn-17_S49_R2_001_contig_86, whole genome shotgun sequence (13708 bp)
Overview 1 RT 1: 2776-6379 bp Neighborhood of RT #1 [2776, 6504] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2776-3033 bp Feature: gene Location: 3001-3176 bp Feature: gene Location: 3913-5580 bp Feature: RT Description: RVT_N Location: 3961-4198 bp Feature: RT Description: RVT_N Location: 3961-4198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4249-4891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 49-4891 bp Feature: domain Description: GIIM Note: maturase Location: 4942-5176 bp Feature: domain Description: GIIM Note: maturase Location: 4942 -5176 bp Feature: domain Description: HNHc Note: nucleases Location: 5386-5545 bp Feature: domain Description: HNHc Note: nucleases Location: 5386-5545 bp Feature: gene Location: 5894-6085 bp Feature: gene Location: 6082-6504 bp Feature: domain Description: DUF1380 Location: 6085-6379 bp Feature: domain Description: DUF1380 Location: 6085-6379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NJPE01000097.1 Klebsiella pneumoniae strain SH1 kpn-17_S49_R2_001_contig_97, whole genome shotgun sequence (1960 bp)
Overview 1 RT 1: 59-1794 bp Neighborhood of RT #1 [59, 1794] RVT-GII Feature: gene Location: 59-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: gene Location: 1543-1794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII