myRT

myRT report for GCA_002370055.1_ASM237005v1

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Seq: NJPL01000006.1 Klebsiella pneumoniae strain 2 NODE_6_length_230291_cov_44.2709, whole genome shotgun sequence (230291 bp)
Overview 1 RT 1: 17458-23720 bp Neighborhood of RT #1 [17458, 23720] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17458-18561 bp Feature: domain Description: STKc_PknB_like Location: 17590-18031 bp Feature: domain Description: STKc_PknB_like Location: 1 7590-1 8031 bp Feature: gene Location: 18631-18873 bp Feature: gene Location: 19120-20220 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19303-19831 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9303-1 9831 bp Feature: gene Location: 20335-22611 bp Feature: domain Description: AAA_15 Location: 20368-21376 bp Feature: domain Description: AAA_1 5 Location: 20368-21 376 bp Feature: gene Location: 23490-23720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NJPL01000088.1 Klebsiella pneumoniae strain 2 NODE_88_length_1892_cov_729.774, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1794 bp Neighborhood of RT #1 [59, 1794] RVT-GII Feature: gene Location: 59-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: gene Location: 1543-1794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NJPL01000072.1 Klebsiella pneumoniae strain 2 NODE_72_length_3728_cov_148.327, whole genome shotgun sequence (3728 bp)
Overview 1 RT 1: 595-3061 bp Neighborhood of RT #1 [595, 3186] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643 -880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: gene Location: 2625-2767 bp Feature: gene Location: 2764-3186 bp Feature: domain Description: DUF1380 Location: 2767-3061 bp Feature: domain Description: DUF13 80 Location: 2767-3 061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)