myRT

myRT report for GCA_002376545.1_ASM237654v1

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Seq: DFOH01000004.1 TPA_asm: Firmicutes bacterium UBA3546 UBA3546_contig_198, whole genome shotgun sequence (198156 bp)
Overview 1 RT 1: 185055-192210 bp Neighborhood of RT #1 [185055, 192278] SLH SLH SLH PKD PKD PKD RVT-GII GIIM pilus_cpaB Feature: gene Location: 185055-188744 bp Feature: domain Description: SLH Location: 185154-185277 bp Feature: domain Description: SLH Location: 1 851 54-1 85277 bp Feature: domain Description: SLH Location: 185340-185466 bp Feature: domain Description: SLH Location: 1 85340-1 85466 bp Feature: domain Description: SLH Location: 185571-185658 bp Feature: domain Description: SLH Location: 1 85571 -1 85658 bp Feature: domain Description: PKD Location: 185955-186042 bp Feature: domain Description: PKD Location: 1 85955-1 86042 bp Feature: domain Description: PKD Location: 186378-186594 bp Feature: domain Description: PKD Location: 1 86378-1 86594 bp Feature: domain Description: PKD Location: 188205-188298 bp Feature: domain Description: PKD Location: 1 88205-1 88298 bp Feature: gene Location: 188790-189074 bp Feature: gene Location: 189633-191042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189984-190602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89984-1 90602 bp Feature: domain Description: GIIM Note: maturase Location: 190653-190884 bp Feature: domain Description: GIIM Note: maturase Location: 1 90653-1 90884 bp Feature: gene Location: 191108-191293 bp Feature: gene Location: 191460-192278 bp Feature: domain Description: pilus_cpaB Location: 191553-192210 bp Feature: domain Description: pilus_cpaB Location: 1 91 553-1 9221 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), PKD (smart00089), RVT-GII, GIIM (pfam08388), pilus_cpaB (TIGR03177)

Seq: DFOH01000060.1 TPA_asm: Firmicutes bacterium UBA3546 UBA3546_contig_2676, whole genome shotgun sequence (5364 bp)
Overview 1 RT 1: 256-5254 bp Neighborhood of RT #1 [256, 5254] PhoE RVT-GII GIIM Feature: gene Location: 256-864 bp Feature: domain Description: PhoE Location: 259-793 bp Feature: domain Description: PhoE Location: 2 59-793 bp Feature: gene Location: 1194-2048 bp Feature: gene Location: 2253-3500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457-3114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 457-3114 bp Feature: domain Description: GIIM Note: maturase Location: 3195-3417 bp Feature: domain Description: GIIM Note: maturase Location: 3195-3417 bp Feature: gene Location: 4042-4200 bp Feature: gene Location: 4223-5254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PhoE (COG0406)

Seq: DFOH01000056.1 TPA_asm: Firmicutes bacterium UBA3546 UBA3546_contig_460, whole genome shotgun sequence (304866 bp)
Overview 1 RT 1: 8-3722 bp Neighborhood of RT #1 [8, 3745] RVT-GII RVT-GII YigB Nudix_Hydrolase_7 Feature: gene Location: 8-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-43 7 bp Feature: gene Location: 1003-1413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 4-1402 bp Feature: gene Location: 2282-2980 bp Feature: domain Description: YigB Location: 2285-2966 bp Feature: domain Description: YigB Location: 2285-2966 bp Feature: gene Location: 3329-3745 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 3350-3722 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 3 3 50-3 722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YigB (COG1011), Nudix_Hydrolase_7 (cd04664)