myRT

myRT report for GCA_002376705.1_ASM237670v1

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Seq: DFOI01000020.1 TPA_asm: Brevundimonas naejangsanensis isolate UBA3545 UBA3545_contig_174, whole genome shotgun sequence (61238 bp)
Overview 1 RT 1: 12128-19920 bp Neighborhood of RT #1 [12128, 19982] retropepsin_like_bacteria retropepsin_like_bacteria PDZ_CTP_protease HTH_17 RVT-Retrons PinE Arm-DNA-bind_3 INT_Rci_Hp1_C Feature: gene Location: 12128-13249 bp Feature: domain Description: retropepsin_like_bacteria Location: 12272-12545 bp Feature: domain Description: retropepsin_like_bacteria Location: 1 2272-1 2545 bp Feature: domain Description: retropepsin_like_bacteria Location: 12671-12917 bp Feature: domain Description: retropepsin_like_bacteria Location: 1 2671 -1 291 7 bp Feature: domain Description: PDZ_CTP_protease Location: 13007-13214 bp Feature: domain Description: PDZ_CTP_protease Location: 1 3007-1 321 4 bp Feature: gene Location: 13687-13926 bp Feature: domain Description: HTH_17 Location: 13747-13888 bp Feature: domain Description: HTH_1 7 Location: 1 3747-1 3888 bp Feature: gene Location: 14196-15197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14310-14901 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 431 0-1 4901 bp Feature: gene Location: 16882-17442 bp Feature: domain Description: PinE Location: 16885-17428 bp Feature: domain Description: PinE Location: 1 6885-1 7428 bp Feature: gene Location: 18828-19982 bp Feature: domain Description: Arm-DNA-bind_3 Location: 18855-19107 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 8855-1 91 07 bp Feature: domain Description: INT_Rci_Hp1_C Location: 19437-19920 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 9437-1 9920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_bacteria (cd05483), PDZ_CTP_protease (cd00988), HTH_17 (pfam12728), RVT-Retrons, PinE (COG1961), Arm-DNA-bind_3 (pfam13356), INT_Rci_Hp1_C (cd00796)

Seq: DFOI01000123.1 TPA_asm: Brevundimonas naejangsanensis isolate UBA3545 UBA3545_contig_390, whole genome shotgun sequence (16948 bp)
Overview 1 RT 1: 1588-6296 bp Neighborhood of RT #1 [1588, 6424] DDE_Tnp_1_6 RVT-UNC XerC HTH_17 Feature: gene Location: 1588-2484 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2074-2446 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 074-2 446 bp Feature: gene Location: 2791-3177 bp Feature: gene Location: 3658-5010 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4309-4768 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4309-4768 bp Feature: gene Location: 5007-6107 bp Feature: domain Description: XerC Location: 5484-6078 bp Feature: domain Description: XerC Location: 5484-6078 bp Feature: gene Location: 6104-6424 bp Feature: domain Description: HTH_17 Location: 6155-6296 bp Feature: domain Description: HTH_17 Location: 6155-62 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RVT-UG11/RVT-UG17/RVT-UG3/RVT-UG28b(RVT-UNC), XerC (COG4973), HTH_17 (pfam12728)