myRT

myRT report for GCA_002377165.1_ASM237716v1

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Seq: DFPH01000032.1 TPA_asm: Firmicutes bacterium UBA3520 UBA3520_contig_143, whole genome shotgun sequence (117621 bp)
Overview 1 RT 1: 111203-116945 bp Neighborhood of RT #1 [111203, 117010] DUF308 SLH SLH RVT-GII GIIM Feature: gene Location: 111203-111757 bp Feature: domain Description: DUF308 Location: 111575-111698 bp Feature: domain Description: DUF308 Location: 1 1 1 575-1 1 1 698 bp Feature: gene Location: 111987-114476 bp Feature: domain Description: SLH Location: 112062-112188 bp Feature: domain Description: SLH Location: 1 1 2062-1 1 21 88 bp Feature: domain Description: SLH Location: 112245-112368 bp Feature: domain Description: SLH Location: 1 1 2245-1 1 2368 bp Feature: gene Location: 115715-117010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115970-116660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5970-1 1 6660 bp Feature: domain Description: GIIM Note: maturase Location: 116720-116945 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 6720-1 1 6945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF308 (pfam03729), SLH (pfam00395), RVT-GII, GIIM (pfam08388)

Seq: DFPH01000002.1 TPA_asm: Firmicutes bacterium UBA3520 UBA3520_contig_259, whole genome shotgun sequence (76502 bp)
Overview 1 RT 1: 220-2258 bp Neighborhood of RT #1 [220, 2296] RVT-GII group_II_RT_mat RHH_1 Feature: gene Location: 220-369 bp Feature: gene Location: 447-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702 -1158 bp Feature: gene Location: 1270-1764 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1276-1639 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 76-1639 bp Feature: gene Location: 2054-2296 bp Feature: domain Description: RHH_1 Location: 2177-2258 bp Feature: domain Description: RHH_1 Location: 2 177-2 2 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), RHH_1 (pfam01402)

Seq: DFPH01000058.1 TPA_asm: Firmicutes bacterium UBA3520 UBA3520_contig_630, whole genome shotgun sequence (19005 bp)
Overview 1 RT 1: 10056-16116 bp Neighborhood of RT #1 [10056, 16116] PLDc_N_DEXD_a DEXDc_RapA PRK04914 NucS RVT-UG14 Feature: gene Location: 10056-12758 bp Feature: domain Description: PLDc_N_DEXD_a Location: 10068-10587 bp Feature: domain Description: PLDc_N_DEXD_a Location: 10068-10587 bp Feature: domain Description: DEXDc_RapA Location: 10749-11403 bp Feature: domain Description: DEXDc_RapA Location: 10749-11403 bp Feature: domain Description: PRK04914 Location: 12315-12537 bp Feature: domain Description: PRK04914 Location: 123 15-1253 7 bp Feature: gene Location: 12830-13843 bp Feature: domain Description: NucS Location: 12854-13100 bp Feature: domain Description: NucS Location: 12854-13 100 bp Feature: gene Location: 13932-15536 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 14283-14640 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 14283 -14640 bp Feature: gene Location: 15718-15879 bp Feature: gene Location: 15931-16116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_a (cd09179), DEXDc_RapA (cd18011), PRK04914 (RNA polymerase-associated protein RapA), NucS (pfam01939), RVT-UG14