myRT

myRT report for GCA_002377945.1_ASM237794v1

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Seq: DFQV01000021.1 TPA_asm: Psychrobacter sp. UBA3480 UBA3480_contig_1, whole genome shotgun sequence (144792 bp)
Overview 1 RT 1: 18152-33660 bp Neighborhood of RT #1 [18152, 33677] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons UvrA UvrA DUF819 Feature: gene Location: 18152-25876 bp Feature: domain Description: WD40 Location: 18386-18869 bp Feature: domain Description: WD40 Location: 1 8386-1 8869 bp Feature: domain Description: WD40 Location: 18926-19151 bp Feature: domain Description: WD40 Location: 1 8926-1 91 51 bp Feature: domain Description: HEAT_2 Location: 19352-19613 bp Feature: domain Description: HEAT_2 Location: 1 9352-1 961 3 bp Feature: domain Description: HEAT_2 Location: 20228-20483 bp Feature: domain Description: HEAT_2 Location: 20228-20483 bp Feature: domain Description: HEAT_2 Location: 23948-24158 bp Feature: domain Description: HEAT_2 Location: 23948-241 58 bp Feature: domain Description: HEAT_2 Location: 25652-25775 bp Feature: domain Description: HEAT_2 Location: 25652-25775 bp Feature: gene Location: 25873-28122 bp Feature: gene Location: 28126-29565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28630-29329 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28630-29329 bp Feature: gene Location: 29665-32232 bp Feature: domain Description: UvrA Location: 29743-30097 bp Feature: domain Description: UvrA Location: 29743-30097 bp Feature: domain Description: UvrA Location: 30121-32224 bp Feature: domain Description: UvrA Location: 301 21 -32224 bp Feature: gene Location: 32490-33677 bp Feature: domain Description: DUF819 Location: 32502-33660 bp Feature: domain Description: DUF81 9 Location: 32502-33660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, UvrA (COG0178), DUF819 (pfam05684)

Seq: DFQV01000031.1 TPA_asm: Psychrobacter sp. UBA3480 UBA3480_contig_129, whole genome shotgun sequence (63421 bp)
Overview 1 RT 1: 21851-29977 bp Neighborhood of RT #1 [21851, 31257] YfeH RVT-AbiP2 DUF2256 DUF3686 AAA_5 AAA_5 Feature: gene Location: 21851-22780 bp Feature: domain Description: YfeH Location: 21863-22772 bp Feature: domain Description: YfeH Location: 2 1863-2 2 772 bp Feature: gene Location: 22888-23226 bp Feature: gene Location: 23310-24425 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23361-23817 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 3361-2 3817 bp Feature: gene Location: 24639-24800 bp Feature: domain Description: DUF2256 Location: 24651-24765 bp Feature: domain Description: DUF2 2 56 Location: 2 4651-2 4765 bp Feature: gene Location: 25054-31257 bp Feature: domain Description: DUF3686 Location: 25192-26563 bp Feature: domain Description: DUF3686 Location: 2 5192 -2 6563 bp Feature: domain Description: AAA_5 Location: 26659-26902 bp Feature: domain Description: AAA_5 Location: 2 6659-2 6902 bp Feature: domain Description: AAA_5 Location: 29608-29977 bp Feature: domain Description: AAA_5 Location: 2 9608-2 9977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfeH (COG0385), RVT-AbiP2, DUF2256 (pfam10013), DUF3686 (pfam12458), AAA_5 (pfam07728)

Seq: DFQV01000020.1 TPA_asm: Psychrobacter sp. UBA3480 UBA3480_contig_9, whole genome shotgun sequence (581627 bp)
Overview 1 RT 1: 478001-484416 bp Neighborhood of RT #1 [478001, 484416] ZipA_C ligA RVT-UG15 Feature: gene Location: 478001-479017 bp Feature: domain Description: ZipA_C Location: 478655-478997 bp Feature: domain Description: ZipA_C Location: 478655-478997 bp Feature: gene Location: 479256-481382 bp Feature: domain Description: ligA Location: 479379-481377 bp Feature: domain Description: ligA Location: 4793 79-4813 77 bp Feature: gene Location: 481459-483033 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 481954-482347 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 481954-4823 47 bp Feature: gene Location: 483111-483674 bp Feature: gene Location: 484006-484416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZipA_C (smart00771), ligA (PRK14351), RVT-UG15