myRT

myRT report for GCA_002378365.1_ASM237836v1

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Seq: DFRV01000013.1 TPA_asm: Pseudomonas stutzeri isolate UBA3454 UBA3454_contig_14, whole genome shotgun sequence (471138 bp)
Overview 1 RT 1: 28243-32915 bp Neighborhood of RT #1 [28243, 32965] Tra5 HTH_Tnp_1 RVT-GII GIIM IS5 YejF Feature: gene Location: 28243-29070 bp Feature: domain Description: Tra5 Location: 28480-29053 bp Feature: domain Description: Tra5 Location: 28480-29053 bp Feature: gene Location: 29064-29330 bp Feature: domain Description: HTH_Tnp_1 Location: 29070-29277 bp Feature: domain Description: HTH_Tnp_1 Location: 29070-29277 bp Feature: gene Location: 29391-30419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29403-30018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29403-3001 8 bp Feature: domain Description: GIIM Note: maturase Location: 30099-30324 bp Feature: domain Description: GIIM Note: maturase Location: 30099-30324 bp Feature: gene Location: 30329-30949 bp Feature: domain Description: IS5 Location: 30476-30923 bp Feature: domain Description: IS5 Location: 30476-30923 bp Feature: gene Location: 31349-32965 bp Feature: domain Description: YejF Location: 31355-32915 bp Feature: domain Description: YejF Location: 31 355-3291 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), IS5 (COG3039), YejF (COG4172)

Seq: DFRV01000005.1 TPA_asm: Pseudomonas stutzeri isolate UBA3454 UBA3454_contig_27, whole genome shotgun sequence (200649 bp)
Overview 1 RT 1: 60561-66276 bp Neighborhood of RT #1 [60561, 66281] gmk PRK11820 RVT_N RVT-GII YkfC HNHc rph DUF4870 Feature: gene Location: 60561-61229 bp Feature: domain Description: gmk Location: 60621-61221 bp Feature: domain Description: gmk Location: 6062 1-612 2 1 bp Feature: gene Location: 61243-62106 bp Feature: domain Description: PRK11820 Location: 61246-62104 bp Feature: domain Description: PRK1182 0 Location: 612 46-62 104 bp Feature: gene Location: 63289-65019 bp Feature: RT Description: RVT_N Location: 63349-63592 bp Feature: RT Description: RVT_N Location: 63349-63592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63640-64291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63640-642 91 bp Feature: domain Description: YkfC Location: 64495-64663 bp Feature: domain Description: YkfC Location: 64495-64663 bp Feature: domain Description: HNHc Note: nucleases Location: 64825-64981 bp Feature: domain Description: HNHc Note: nucleases Location: 6482 5-64981 bp Feature: gene Location: 65173-65895 bp Feature: domain Description: rph Location: 65182-65890 bp Feature: domain Description: rph Location: 65182 -65890 bp Feature: gene Location: 65913-66281 bp Feature: domain Description: DUF4870 Location: 65958-66276 bp Feature: domain Description: DUF4870 Location: 65958-662 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gmk (PRK14738), PRK11820 (YicC family protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rph (PRK00173), DUF4870 (pfam09685)