myRT

myRT report for GCA_002379085.1_ASM237908v1

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Seq: NBZW01000003.1 Polaromonas sp. AET17H-212 scaffold_2, whole genome shotgun sequence (278086 bp)
Overview 1 RT 1: 247169-254481 bp Neighborhood of RT #1 [247169, 254510] YpjD RVT_N RVT-GII GIIM McrA PRK10867 PRK05454 Feature: gene Location: 247169-247402 bp Feature: gene Location: 247399-248163 bp Feature: domain Description: YpjD Location: 247417-248158 bp Feature: domain Description: YpjD Location: 24741 7-2481 58 bp Feature: gene Location: 248320-249942 bp Feature: domain Description: RVT_N Location: 248323-248515 bp Feature: domain Description: RVT_N Location: 248323-24851 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248560-249208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248560-249208 bp Feature: domain Description: GIIM Note: maturase Location: 249259-249493 bp Feature: domain Description: GIIM Note: maturase Location: 249259-249493 bp Feature: domain Description: McrA Location: 249598-249886 bp Feature: domain Description: McrA Location: 249598-249886 bp Feature: gene Location: 251079-252437 bp Feature: domain Description: PRK10867 Location: 251082-252408 bp Feature: domain Description: PRK1 0867 Location: 251 082-252408 bp Feature: gene Location: 252540-254510 bp Feature: domain Description: PRK05454 Location: 252594-254481 bp Feature: domain Description: PRK05454 Location: 252594-254481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YpjD (COG4137), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK10867 (signal recognition particle protein; Provisional), PRK05454 (glucans biosynthesis glucosyltransferase MdoH)

Seq: NBZW01000031.1 Polaromonas sp. AET17H-212 scaffold_30, whole genome shotgun sequence (48138 bp)
Overview 1 RT 1: 9716-22262 bp Neighborhood of RT #1 [9716, 25534] HNH_2 RVT-UG1 Phage_int_SAM_4 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-UG1 HsdM Feature: gene Location: 9716-10252 bp Feature: gene Location: 10278-11012 bp Feature: domain Description: HNH_2 Location: 10692-10848 bp Feature: domain Description: HNH_2 Location: 10692 -10848 bp Feature: gene Location: 11079-14054 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 11124-11388 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1112 4-11388 bp Feature: gene Location: 14214-15464 bp Feature: domain Description: Phage_int_SAM_4 Location: 14604-14820 bp Feature: domain Description: Phage_int_SAM_4 Location: 14604-1482 0 bp Feature: domain Description: INT_RitA_C_like Location: 14916-15441 bp Feature: domain Description: INT_RitA_C_like Location: 14916-15441 bp Feature: gene Location: 15461-16426 bp Feature: domain Description: INT_RitB_C_like Location: 15788-16394 bp Feature: domain Description: INT_RitB_C_like Location: 15788-16394 bp Feature: gene Location: 16419-17429 bp Feature: domain Description: Phage_int_SAM_1 Location: 16470-16731 bp Feature: domain Description: Phage_int_SAM_1 Location: 16470-16731 bp Feature: domain Description: INT_RitC_C_like Location: 16812-17352 bp Feature: domain Description: INT_RitC_C_like Location: 16812 -17352 bp Feature: gene Location: 17509-18444 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 18130-18421 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 18130-1842 1 bp Feature: gene Location: 18464-20461 bp Feature: gene Location: 20471-25534 bp Feature: domain Description: HsdM Location: 21797-22262 bp Feature: domain Description: HsdM Location: 2 1797-2 2 2 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_2 (pfam13391), RVT-UG1, Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), HsdM (COG0286)