myRT

myRT report for GCA_002380205.1_ASM238020v1

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Seq: DFWA01000150.1 TPA_asm: Alteromonas macleodii isolate UBA4146 UBA4146_contig_110396, whole genome shotgun sequence (17141 bp)
Overview 1 RT 1: 2-5427 bp Neighborhood of RT #1 [2, 5432] AAA_15 AAA_15 RVT-Retrons HMA PRK14727 Feature: gene Location: 2-193 bp Feature: gene Location: 480-1835 bp Feature: domain Description: AAA_15 Location: 483-714 bp Feature: domain Description: AAA_1 5 Location: 483-71 4 bp Feature: domain Description: AAA_15 Location: 861-1224 bp Feature: domain Description: AAA_1 5 Location: 861 -1 224 bp Feature: gene Location: 1840-2985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2110-2677 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 1 0-2677 bp Feature: gene Location: 3363-3491 bp Feature: gene Location: 3792-5432 bp Feature: domain Description: HMA Location: 3804-3984 bp Feature: domain Description: HMA Location: 3804-3984 bp Feature: domain Description: PRK14727 Location: 4011-5427 bp Feature: domain Description: PRK1 4727 Location: 401 1 -5427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, HMA (pfam00403), PRK14727 (putative mercuric reductase; Provisional)

Seq: DFWA01000228.1 TPA_asm: Alteromonas macleodii isolate UBA4146 UBA4146_contig_178029, whole genome shotgun sequence (9937 bp)
Overview 1 RT 1: 2791-8226 bp Neighborhood of RT #1 [2791, 8226] Abi_C RVT-UG14 Feature: gene Location: 2791-2982 bp Feature: gene Location: 3106-3918 bp Feature: domain Description: Abi_C Location: 3637-3841 bp Feature: domain Description: Abi_C Location: 3637-3841 bp Feature: gene Location: 4004-5548 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 4433-4919 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 4433-4919 bp Feature: gene Location: 6256-6783 bp Feature: gene Location: 7231-8226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abi_C (pfam14355), RVT-UG14

Seq: DFWA01000069.1 TPA_asm: Alteromonas macleodii isolate UBA4146 UBA4146_contig_384767, whole genome shotgun sequence (3406 bp)
Overview 1 RT 1: 2-3000 bp Neighborhood of RT #1 [2, 3161] PilZ PilZ RVT-GII GIIM Feature: gene Location: 2-1528 bp Feature: domain Description: PilZ Location: 494-752 bp Feature: domain Description: PilZ Location: 494-752 bp Feature: domain Description: PilZ Location: 1397-1517 bp Feature: domain Description: PilZ Location: 13 97-1517 bp Feature: gene Location: 1773-3161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103-2721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103 -2721 bp Feature: domain Description: GIIM Note: maturase Location: 2769-3000 bp Feature: domain Description: GIIM Note: maturase Location: 2769-3 000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilZ (pfam07238), RVT-GII, GIIM (pfam08388)