myRT

myRT report for GCA_002381445.1_ASM238144v1

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Seq: DFTV01000009.1 TPA_asm: Arsukibacterium sp. UBA4203 UBA4203_contig_2591, whole genome shotgun sequence (13706 bp)
Overview 1 RT 1: 9621-13253 bp Neighborhood of RT #1 [9621, 13279] HTH_Tnp_1 HTH_Tnp_1 HTH_32 Tra5 RVT-Retrons HTH_17 Feature: gene Location: 9621-10058 bp Feature: domain Description: HTH_Tnp_1 Location: 9627-9735 bp Feature: domain Description: HTH_Tnp_1 Location: 9627-9735 bp Feature: domain Description: HTH_Tnp_1 Location: 9738-9963 bp Feature: domain Description: HTH_Tnp_1 Location: 9738-9963 bp Feature: gene Location: 10061-11119 bp Feature: domain Description: HTH_32 Location: 10163-10385 bp Feature: domain Description: HTH_32 Location: 1 01 63-1 0385 bp Feature: domain Description: Tra5 Location: 10445-10946 bp Feature: domain Description: Tra5 Location: 1 0445-1 0946 bp Feature: gene Location: 11128-12078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11281-11827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 281 -1 1 827 bp Feature: gene Location: 12288-12686 bp Feature: gene Location: 13070-13279 bp Feature: domain Description: HTH_17 Location: 13100-13253 bp Feature: domain Description: HTH_1 7 Location: 1 31 00-1 3253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801), RVT-Retrons, HTH_17 (pfam12728)

Seq: DFTV01000002.1 TPA_asm: Arsukibacterium sp. UBA4203 UBA4203_contig_659, whole genome shotgun sequence (10481 bp)
Overview 1 RT 1: 594-6260 bp Neighborhood of RT #1 [594, 6280] DUF1566 DUF1566 RVT-UG12 RMtype1_S_SonII-TRD2-CR2_like HsdS RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 594-908 bp Feature: gene Location: 1205-2107 bp Feature: domain Description: DUF1566 Location: 1220-1469 bp Feature: domain Description: DUF1566 Location: 12 2 0-1469 bp Feature: domain Description: DUF1566 Location: 1547-1883 bp Feature: domain Description: DUF1566 Location: 1547-1883 bp Feature: gene Location: 2244-3833 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2640-3060 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2 640-3060 bp Feature: gene Location: 3840-4535 bp Feature: gene Location: 4532-6280 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4853-5399 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 4853-5399 bp Feature: domain Description: HsdS Location: 5435-5657 bp Feature: domain Description: HsdS Location: 5435-5657 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 5702-6260 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 5702 -62 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-UG12, RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdS (COG0732)

Seq: DFTV01000018.1 TPA_asm: Arsukibacterium sp. UBA4203 UBA4203_contig_66, whole genome shotgun sequence (136507 bp)
Overview 1 RT 1: 38790-43256 bp Neighborhood of RT #1 [38790, 43501] COG4994 RVT-Retrons AAA_15 AAA_15 TOPRIM_OLD Feature: gene Location: 38790-39008 bp Feature: gene Location: 39028-39399 bp Feature: domain Description: COG4994 Location: 39040-39382 bp Feature: domain Description: COG4994 Location: 3 9040-3 93 82 bp Feature: gene Location: 39582-40514 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39681-40266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 9681-40266 bp Feature: gene Location: 40504-41436 bp Feature: gene Location: 41855-43501 bp Feature: domain Description: AAA_15 Location: 41858-41996 bp Feature: domain Description: AAA_15 Location: 41858-41996 bp Feature: domain Description: AAA_15 Location: 42329-42860 bp Feature: domain Description: AAA_15 Location: 423 29-42860 bp Feature: domain Description: TOPRIM_OLD Location: 43013-43256 bp Feature: domain Description: TOPRIM_OLD Location: 43 013 -43 256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4994 (Uncharacterized protein ), RVT-Retrons, AAA_15 (pfam13175), TOPRIM_OLD (cd01026)