myRT

myRT report for GCA_002382885.1_WZ.A104

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Seq: NWVL01000104.1 Streptomyces sp. WZ.A104 Scaffold104, whole genome shotgun sequence (22204 bp)
Overview 1 RT 1: 1-2812 bp Neighborhood of RT #1 [1, 2812] RVT-GII GIIM DUF4096 COG3293 Feature: gene Location: 1-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00-784 bp Feature: domain Description: GIIM Note: maturase Location: 856-1090 bp Feature: domain Description: GIIM Note: maturase Location: 856-1 090 bp Feature: gene Location: 1340-2140 bp Feature: domain Description: DUF4096 Location: 1358-1574 bp Feature: domain Description: DUF4096 Location: 1 358-1 574 bp Feature: domain Description: COG3293 Location: 1805-2135 bp Feature: domain Description: COG3293 Location: 1 805-21 35 bp Feature: gene Location: 2297-2812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4096 (pfam13340), COG3293 (Transposase )

Seq: NWVL01000007.1 Streptomyces sp. WZ.A104 Scaffold7, whole genome shotgun sequence (167686 bp)
Overview 1 RT 1: 107230-111441 bp Neighborhood of RT #1 [107230, 111551] Phage_int_SAM_1 RVT-GII GIIM recomb_XerC HTH_26 Feature: gene Location: 107230-107721 bp Feature: gene Location: 107886-108290 bp Feature: domain Description: Phage_int_SAM_1 Location: 108117-108219 bp Feature: domain Description: Phage_int_SAM_1 Location: 108117-1082 19 bp Feature: gene Location: 108882-110375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109224-109917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 2 4-109917 bp Feature: domain Description: GIIM Note: maturase Location: 109986-110196 bp Feature: domain Description: GIIM Note: maturase Location: 109986-110196 bp Feature: gene Location: 110502-111194 bp Feature: domain Description: recomb_XerC Location: 110556-111171 bp Feature: domain Description: recomb_XerC Location: 110556-111171 bp Feature: gene Location: 111207-111551 bp Feature: domain Description: HTH_26 Location: 111237-111441 bp Feature: domain Description: HTH_2 6 Location: 1112 37-111441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), RVT-GII, GIIM (pfam08388), recomb_XerC (TIGR02224), HTH_26 (pfam13443)

Seq: NWVL01000049.1 Streptomyces sp. WZ.A104 Scaffold49, whole genome shotgun sequence (61936 bp)
Overview 1 RT 1: 4259-10377 bp Neighborhood of RT #1 [4259, 10385] Cof TolA_bind_tri RVT_N RVT-GII GIIM HNH NosY CcmA Feature: gene Location: 4259-5074 bp Feature: domain Description: Cof Location: 4271-5054 bp Feature: domain Description: Cof Location: 4271-5054 bp Feature: gene Location: 5143-5838 bp Feature: domain Description: TolA_bind_tri Location: 5668-5824 bp Feature: domain Description: TolA_bind_tri Location: 5668-5824 bp Feature: gene Location: 6095-7867 bp Feature: RT Description: RVT_N Location: 6167-6410 bp Feature: RT Description: RVT_N Location: 6167-6410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6464-7124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6464-7124 bp Feature: domain Description: GIIM Note: maturase Location: 7178-7409 bp Feature: domain Description: GIIM Note: maturase Location: 7178-7409 bp Feature: domain Description: HNH Note: nucleases Location: 7733-7835 bp Feature: domain Description: HNH Note: nucleases Location: 773 3 -783 5 bp Feature: gene Location: 8724-9443 bp Feature: domain Description: NosY Location: 8892-9183 bp Feature: domain Description: NosY Location: 8892-9183 bp Feature: gene Location: 9474-10385 bp Feature: domain Description: CcmA Location: 9483-10377 bp Feature: domain Description: CcmA Location: 9483 -103 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cof (COG0561), TolA_bind_tri (pfam16331), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), NosY (COG1277), CcmA (COG4133)