myRT

myRT report for GCA_002383325.1_ASM238332v1

Download annotations/find similar RTs

Seq: DFYJ01000068.1 TPA_asm: Candidatus Aminicenantes bacterium UBA4085 UBA4085_contig_17629, whole genome shotgun sequence (43254 bp)
Overview 1 RT 1: 2-4259 bp Neighborhood of RT #1 [2, 4567] RVT-GII GIIM TAT_signal DUF362 Glyco_hydro_127 Feature: gene Location: 2-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239-857 bp Feature: domain Description: GIIM Note: maturase Location: 908-1130 bp Feature: domain Description: GIIM Note: maturase Location: 908-1 1 30 bp Feature: gene Location: 1419-2675 bp Feature: domain Description: TAT_signal Location: 1425-1494 bp Feature: domain Description: TAT_signal Location: 1 425-1 494 bp Feature: domain Description: DUF362 Location: 1701-2541 bp Feature: domain Description: DUF362 Location: 1 701 -2541 bp Feature: gene Location: 2690-4567 bp Feature: domain Description: Glyco_hydro_127 Location: 2954-4259 bp Feature: domain Description: Glyco_hydro_1 27 Location: 2954-4259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAT_signal (pfam10518), DUF362 (pfam04015), RVT-GII, GIIM (pfam08388), Glyco_hydro_127 (pfam07944)

Seq: DFYJ01000084.1 TPA_asm: Candidatus Aminicenantes bacterium UBA4085 UBA4085_contig_37422, whole genome shotgun sequence (53738 bp)
Overview 1 RT 1: 686-6496 bp Neighborhood of RT #1 [686, 6663] RVT-GII GIIM DDE_Tnp_IS1595 COG5421 Feature: gene Location: 686-2287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 38-1856 bp Feature: domain Description: GIIM Note: maturase Location: 1904-2114 bp Feature: domain Description: GIIM Note: maturase Location: 1904-2 114 bp Feature: gene Location: 3935-4717 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 4184-4607 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 4184-4607 bp Feature: gene Location: 5011-6663 bp Feature: domain Description: COG5421 Location: 5176-6496 bp Feature: domain Description: COG542 1 Location: 5176-6496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1595 (pfam12762), COG5421 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: DFYJ01000123.1 TPA_asm: Candidatus Aminicenantes bacterium UBA4085 UBA4085_contig_58066, whole genome shotgun sequence (6777 bp)
Overview 1 RT 1: 1800-6775 bp Neighborhood of RT #1 [1800, 6775] DNA_alkylation Aes Dockerin_I RVT-CRISPR-like Feature: gene Location: 1800-2567 bp Feature: domain Description: DNA_alkylation Location: 1848-2499 bp Feature: domain Description: DNA_alkylation Location: 1848-2499 bp Feature: gene Location: 2632-3795 bp Feature: domain Description: Aes Location: 2764-3595 bp Feature: domain Description: Aes Location: 2764-3 595 bp Feature: domain Description: Dockerin_I Location: 3610-3775 bp Feature: domain Description: Dockerin_I Location: 3 610-3 775 bp Feature: gene Location: 4221-5549 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4449-5073 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4449-5073 bp Feature: gene Location: 5549-6775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_alkylation (pfam08713), Aes (COG0657), Dockerin_I (cd14256), RVT-CRISPR