myRT

myRT report for GCA_002384615.1_ASM238461v1

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Seq: DGCM01000070.1 TPA_asm: Gammaproteobacteria bacterium UBA3978 UBA3978_contig_1262, whole genome shotgun sequence (84516 bp)
Overview 1 RT 1: 46076-51855 bp Neighborhood of RT #1 [46076, 51857] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM ligand_gated_channel Feature: gene Location: 46076-47575 bp Feature: domain Description: LZ_Tnp_IS66 Location: 46301-46520 bp Feature: domain Description: LZ_Tnp_IS66 Location: 46301 -46520 bp Feature: domain Description: zf-IS66 Location: 46541-46667 bp Feature: domain Description: zf-IS66 Location: 46541 -46667 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46709-47534 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46709-47534 bp Feature: gene Location: 47783-47965 bp Feature: gene Location: 48033-49271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48237-48894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48237-48894 bp Feature: domain Description: GIIM Note: maturase Location: 48972-49194 bp Feature: domain Description: GIIM Note: maturase Location: 48972-491 94 bp Feature: gene Location: 49297-49470 bp Feature: gene Location: 49608-51857 bp Feature: domain Description: ligand_gated_channel Location: 49740-51855 bp Feature: domain Description: ligand_gated_channel Location: 49740-51 855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), ligand_gated_channel (cd01347)

Seq: DGCM01000130.1 TPA_asm: Gammaproteobacteria bacterium UBA3978 UBA3978_contig_7068, whole genome shotgun sequence (46201 bp)
Overview 1 RT 1: 39329-44340 bp Neighborhood of RT #1 [39329, 44375] SpoVK RVT-Retrons RMtype1_S_EcoKI-TRD2-CR2_like RMtype1_S_EcoKI-TRD2-CR2_like Feature: gene Location: 39329-39664 bp Feature: gene Location: 39745-40746 bp Feature: domain Description: SpoVK Location: 39985-40675 bp Feature: domain Description: SpoVK Location: 39985-40675 bp Feature: gene Location: 40874-41743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40940-41492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40940-41492 bp Feature: gene Location: 42446-43021 bp Feature: gene Location: 43068-44375 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 43488-43632 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2 -CR2 _like Location: 43488-43632 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 43773-44340 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2 -CR2 _like Location: 43773-44340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVK (COG0464), RVT-Retrons, RMtype1_S_EcoKI-TRD2-CR2_like (cd17261)