myRT

myRT report for GCA_002387455.1_ASM238745v1

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Seq: DGJH01000053.1 TPA_asm: Clostridium sp. UBA4601 UBA4601_contig_1062, whole genome shotgun sequence (39682 bp)
Overview 1 RT 1: 37406-39631 bp Neighborhood of RT #1 [37406, 39681] ModC PBP2_YvgL_like RVT-GII GIIM Feature: gene Location: 37406-38071 bp Feature: domain Description: ModC Location: 37409-38060 bp Feature: domain Description: ModC Location: 37409-38060 bp Feature: gene Location: 38191-39003 bp Feature: domain Description: PBP2_YvgL_like Location: 38326-38995 bp Feature: domain Description: PBP2_YvgL_like Location: 38326-38995 bp Feature: gene Location: 39148-39681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39226-39379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39226-39379 bp Feature: domain Description: GIIM Note: maturase Location: 39457-39631 bp Feature: domain Description: GIIM Note: maturase Location: 39457-39631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ModC (COG4149), PBP2_YvgL_like (cd13537), RVT-GII, GIIM (pfam08388)

Seq: DGJH01000010.1 TPA_asm: Clostridium sp. UBA4601 UBA4601_contig_374, whole genome shotgun sequence (43210 bp)
Overview 1 RT 1: 36365-40723 bp Neighborhood of RT #1 [36365, 40887] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII RVT-GII GIIM GIIM Feature: gene Location: 36365-36715 bp Feature: domain Description: TnpB_IS66 Location: 36392-36677 bp Feature: domain Description: TnpB_IS66 Location: 36392 -36677 bp Feature: gene Location: 36805-38469 bp Feature: domain Description: LZ_Tnp_IS66 Location: 37003-37195 bp Feature: domain Description: LZ_Tnp_IS66 Location: 37003-37195 bp Feature: domain Description: zf-IS66 Location: 37225-37354 bp Feature: domain Description: zf-IS66 Location: 372 2 5-37354 bp Feature: domain Description: DDE_Tnp_IS66 Location: 37417-38284 bp Feature: domain Description: DDE_Tnp_IS66 Location: 37417-382 84 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 38305-38425 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 38305-3842 5 bp Feature: gene Location: 38952-39446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39234-39414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 34-39414 bp Feature: gene Location: 39452-39718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39455-39692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39455-39692 bp Feature: gene Location: 40042-40272 bp Feature: domain Description: GIIM Note: maturase Location: 40048-40198 bp Feature: domain Description: GIIM Note: maturase Location: 40048-40198 bp Feature: gene Location: 40468-40887 bp Feature: domain Description: GIIM Note: maturase Location: 40498-40723 bp Feature: domain Description: GIIM Note: maturase Location: 40498-4072 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: DGJH01000101.1 TPA_asm: Clostridium sp. UBA4601 UBA4601_contig_979, whole genome shotgun sequence (31680 bp)
Overview 1 RT 1: 14436-21891 bp Neighborhood of RT #1 [14436, 21891] RVT-UG28 YjgR YjgR Feature: gene Location: 14436-15242 bp Feature: gene Location: 15522-16244 bp Feature: gene Location: 16981-18480 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 17260-17899 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 17260-17899 bp Feature: gene Location: 18950-20722 bp Feature: domain Description: YjgR Location: 19109-19565 bp Feature: domain Description: YjgR Location: 19109-19565 bp Feature: domain Description: YjgR Location: 19913-20624 bp Feature: domain Description: YjgR Location: 19913 -20624 bp Feature: gene Location: 20737-21891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, YjgR (COG0433)