myRT

myRT report for GCA_002388065.1_ASM238806v1

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Seq: DGLT01000009.1 TPA_asm: Pseudomonas stutzeri isolate UBA4537 UBA4537_contig_11, whole genome shotgun sequence (174835 bp)
Overview 1 RT 1: 39445-47668 bp Neighborhood of RT #1 [39445, 47673] PRK09579 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 39445-42501 bp Feature: domain Description: PRK09579 Location: 39448-42487 bp Feature: domain Description: PRK09579 Location: 39448-42487 bp Feature: gene Location: 42513-42734 bp Feature: gene Location: 42966-44657 bp Feature: RT Description: RVT_N Location: 43020-43260 bp Feature: RT Description: RVT_N Location: 43020-43260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43308-43953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43308-43953 bp Feature: domain Description: GIIM Note: maturase Location: 44004-44238 bp Feature: domain Description: GIIM Note: maturase Location: 44004-44238 bp Feature: domain Description: HNHc Note: nucleases Location: 44457-44610 bp Feature: domain Description: HNHc Note: nucleases Location: 44457-4461 0 bp Feature: gene Location: 45692-47332 bp Feature: domain Description: groEL Location: 45698-47318 bp Feature: domain Description: groEL Location: 45698-4731 8 bp Feature: gene Location: 47380-47673 bp Feature: domain Description: groES Location: 47383-47668 bp Feature: domain Description: groES Location: 47383-47668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09579 (multidrug efflux RND transporter permease subunit), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: DGLT01000029.1 TPA_asm: Pseudomonas stutzeri isolate UBA4537 UBA4537_contig_120, whole genome shotgun sequence (16613 bp)
Overview 1 RT 1: 2-4349 bp Neighborhood of RT #1 [2, 4357] RVT-GII GIIM HNHc PRK05347 cysS Feature: gene Location: 2-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-308 bp Feature: domain Description: GIIM Note: maturase Location: 383-614 bp Feature: domain Description: GIIM Note: maturase Location: 383-614 bp Feature: domain Description: HNHc Note: nucleases Location: 842-998 bp Feature: domain Description: HNHc Note: nucleases Location: 842 -998 bp Feature: gene Location: 1305-2972 bp Feature: domain Description: PRK05347 Location: 1320-2967 bp Feature: domain Description: PRK05347 Location: 132 0-2 967 bp Feature: gene Location: 2972-4357 bp Feature: domain Description: cysS Location: 2975-4349 bp Feature: domain Description: cysS Location: 2 975-4349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05347 (glutaminyl-tRNA synthetase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), cysS (TIGR00435)

Seq: DGLT01000019.1 TPA_asm: Pseudomonas stutzeri isolate UBA4537 UBA4537_contig_14, whole genome shotgun sequence (260190 bp)
Overview 1 RT 1: 2-3554 bp Neighborhood of RT #1 [2, 3562] RVT-GII GIIM HNHc PRK07994 PRK00153 Feature: gene Location: 2-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-3 08 bp Feature: domain Description: GIIM Note: maturase Location: 383-614 bp Feature: domain Description: GIIM Note: maturase Location: 3 83 -614 bp Feature: domain Description: HNHc Note: nucleases Location: 842-998 bp Feature: domain Description: HNHc Note: nucleases Location: 842-998 bp Feature: gene Location: 1249-3216 bp Feature: domain Description: PRK07994 Location: 1252-3199 bp Feature: domain Description: PRK07994 Location: 1252-3 199 bp Feature: gene Location: 3236-3562 bp Feature: domain Description: PRK00153 Location: 3242-3554 bp Feature: domain Description: PRK00153 Location: 3 242-3 554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07994 (DNA polymerase III subunits gamma and tau; Validated), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DGLT01000011.1 TPA_asm: Pseudomonas stutzeri isolate UBA4537 UBA4537_contig_151, whole genome shotgun sequence (138747 bp)
Overview 1 RT 1: 46053-51282 bp Neighborhood of RT #1 [46053, 51282] IS5 RVT_N RVT-GII GIIM IS5 Feature: gene Location: 46053-46268 bp Feature: gene Location: 46986-47519 bp Feature: domain Description: IS5 Location: 47175-47508 bp Feature: domain Description: IS5 Location: 4 7175-4 7508 bp Feature: gene Location: 48112-49617 bp Feature: RT Description: RVT_N Location: 48193-48418 bp Feature: RT Description: RVT_N Location: 4 8193-4 84 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48469-49111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 84 69-4 9111 bp Feature: domain Description: GIIM Note: maturase Location: 49162-49396 bp Feature: domain Description: GIIM Note: maturase Location: 4 9162-4 9396 bp Feature: gene Location: 49708-50148 bp Feature: domain Description: IS5 Location: 49714-50116 bp Feature: domain Description: IS5 Location: 4 9714 -50116 bp Feature: gene Location: 50974-51282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DGLT01000023.1 TPA_asm: Pseudomonas stutzeri isolate UBA4537 UBA4537_contig_4, whole genome shotgun sequence (249104 bp)
Overview 1 RT 1: 160844-166559 bp Neighborhood of RT #1 [160844, 166564] gmk YicC RVT_N RVT-GII YkfC HNHc rph DUF4870 Feature: gene Location: 160844-161512 bp Feature: domain Description: gmk Location: 160904-161504 bp Feature: domain Description: gmk Location: 160904-1615 04 bp Feature: gene Location: 161526-162389 bp Feature: domain Description: YicC Location: 161529-162387 bp Feature: domain Description: YicC Location: 1615 29-162387 bp Feature: gene Location: 163572-165302 bp Feature: RT Description: RVT_N Location: 163632-163875 bp Feature: RT Description: RVT_N Location: 163632-163875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163923-164574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163923-1645 74 bp Feature: domain Description: YkfC Location: 164778-164946 bp Feature: domain Description: YkfC Location: 164778-164946 bp Feature: domain Description: HNHc Note: nucleases Location: 165108-165264 bp Feature: domain Description: HNHc Note: nucleases Location: 165 108-165 264 bp Feature: gene Location: 165457-166179 bp Feature: domain Description: rph Location: 165466-166174 bp Feature: domain Description: rph Location: 165 466-166174 bp Feature: gene Location: 166196-166564 bp Feature: domain Description: DUF4870 Location: 166241-166559 bp Feature: domain Description: DUF4870 Location: 166241-1665 5 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gmk (PRK14738), YicC (COG1561), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rph (PRK00173), DUF4870 (pfam09685)