myRT

myRT report for GCA_002389115.1_ASM238911v1

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Seq: DGNW01000003.1 TPA_asm: Pseudomonas stutzeri isolate UBA4482 UBA4482_contig_10, whole genome shotgun sequence (528715 bp)
Overview 1 RT 1: 32952-42260 bp 2 RT 2: 332724-337197 bp Neighborhood of RT #1 [32952, 42628] DUF4823 YgiQ RVT-UG5 Prok-E2_A E1_enzyme_family Prok-JAB ComA-like_MBL-fold ComA-like_MBL-fold Neighborhood of RT #2 [332724, 337211] IS5 RVT-GII GIIM IS5 GstA Feature: gene Location: 32952-33716 bp Feature: domain Description: DUF4823 Location: 33255-33699 bp Feature: domain Description: DUF4823 Location: 33255-33699 bp Feature: gene Location: 33676-34449 bp Feature: domain Description: YgiQ Location: 33700-34183 bp Feature: domain Description: YgiQ Location: 33700-341 83 bp Feature: gene Location: 34801-37977 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 35338-35836 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 35338-35836 bp Feature: gene Location: 39216-41300 bp Feature: domain Description: Prok-E2_A Location: 39231-39600 bp Feature: domain Description: Prok-E2_A Location: 39231 -39600 bp Feature: domain Description: E1_enzyme_family Location: 40185-40515 bp Feature: domain Description: E1 _enzyme_family Location: 401 85-4051 5 bp Feature: domain Description: Prok-JAB Location: 40917-41274 bp Feature: domain Description: Prok-JAB Location: 4091 7-41 274 bp Feature: gene Location: 41438-42628 bp Feature: domain Description: ComA-like_MBL-fold Location: 41450-41687 bp Feature: domain Description: ComA-like_MBL-fold Location: 41 450-41 687 bp Feature: domain Description: ComA-like_MBL-fold Location: 42059-42260 bp Feature: domain Description: ComA-like_MBL-fold Location: 42059-42260 bp Feature: gene Location: 332724-332930 bp Feature: gene Location: 333656-334114 bp Feature: domain Description: IS5 Location: 333659-334079 bp Feature: domain Description: IS5 Location: 333659-334079 bp Feature: gene Location: 334186-335454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334399-335056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334399-335056 bp Feature: domain Description: GIIM Note: maturase Location: 335134-335356 bp Feature: domain Description: GIIM Note: maturase Location: 3351 34-335356 bp Feature: gene Location: 335947-336486 bp Feature: domain Description: IS5 Location: 336133-336463 bp Feature: domain Description: IS5 Location: 3361 33-336463 bp Feature: gene Location: 336624-337211 bp Feature: domain Description: GstA Location: 336627-337197 bp Feature: domain Description: GstA Location: 336627-3371 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4823 (pfam16105), YgiQ (COG1032), RVT-UG5, Prok-E2_A (pfam14457), E1_enzyme_family (cl22428), Prok-JAB (pfam14464), ComA-like_MBL-fold (cd07731), IS5 (COG3039), RVT-GII, GIIM (pfam08388)
GstA (COG0625)