myRT

myRT report for GCA_002392655.1_ASM239265v1

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Seq: DGHK01000039.1 TPA_asm: Lachnospiraceae bacterium UBA3850 UBA3850_contig_29633, whole genome shotgun sequence (93986 bp)
Overview 1 RT 1: 3-3604 bp Neighborhood of RT #1 [3, 3609] RVT-GII GIIM dapF PRK07590 Feature: gene Location: 3-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150-765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50-765 bp Feature: domain Description: GIIM Note: maturase Location: 825-1056 bp Feature: domain Description: GIIM Note: maturase Location: 825-1 056 bp Feature: gene Location: 1411-2355 bp Feature: domain Description: dapF Location: 1414-2353 bp Feature: domain Description: dapF Location: 1 41 4-2353 bp Feature: gene Location: 2392-3609 bp Feature: domain Description: PRK07590 Location: 2395-3604 bp Feature: domain Description: PRK07590 Location: 2395-3604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), dapF (PRK00450), PRK07590 (L,L-diaminopimelate aminotransferase; Validated)

Seq: DGHK01000049.1 TPA_asm: Lachnospiraceae bacterium UBA3850 UBA3850_contig_38760, whole genome shotgun sequence (60701 bp)
Overview 1 RT 1: 57586-60522 bp Neighborhood of RT #1 [57586, 60698] ADP_ribosyl_GH RVT-GII GIIM Feature: gene Location: 57586-58569 bp Feature: domain Description: ADP_ribosyl_GH Location: 57640-58507 bp Feature: domain Description: ADP_ribosyl_GH Location: 57640-58507 bp Feature: gene Location: 58912-59172 bp Feature: gene Location: 59355-60698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59622-60246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5962 2 -602 46 bp Feature: domain Description: GIIM Note: maturase Location: 60303-60522 bp Feature: domain Description: GIIM Note: maturase Location: 60303-6052 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADP_ribosyl_GH (pfam03747), RVT-GII, GIIM (pfam08388)

Seq: DGHK01000018.1 TPA_asm: Lachnospiraceae bacterium UBA3850 UBA3850_contig_53048, whole genome shotgun sequence (55386 bp)
Overview 1 RT 1: 4507-11761 bp Neighborhood of RT #1 [4507, 12003] OmpR UBA_NAC_like_bac DUF4342 RVT-UG26 UshA CW_binding_1 CW_binding_1 PBP1_BmpA_Med_like Feature: gene Location: 4507-5229 bp Feature: domain Description: OmpR Location: 4522-5221 bp Feature: domain Description: OmpR Location: 4522-5221 bp Feature: gene Location: 5275-5805 bp Feature: domain Description: UBA_NAC_like_bac Location: 5287-5398 bp Feature: domain Description: UBA_NAC_like_bac Location: 5287-53 98 bp Feature: domain Description: DUF4342 Location: 5527-5716 bp Feature: domain Description: DUF43 42 Location: 5527-5716 bp Feature: gene Location: 6055-7275 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6256-6871 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 6256-6871 bp Feature: gene Location: 7457-10093 bp Feature: domain Description: UshA Location: 7556-8804 bp Feature: domain Description: UshA Location: 7556-8804 bp Feature: domain Description: CW_binding_1 Location: 9797-9848 bp Feature: domain Description: CW_binding_1 Location: 9797-9848 bp Feature: domain Description: CW_binding_1 Location: 9986-10034 bp Feature: domain Description: CW_binding_1 Location: 9986-1003 4 bp Feature: gene Location: 10090-12003 bp Feature: domain Description: PBP1_BmpA_Med_like Location: 10978-11761 bp Feature: domain Description: PBP1_BmpA_Med_like Location: 10978-11761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), UBA_NAC_like_bac (cd14360), DUF4342 (pfam14242), RVT-UG26, UshA (COG0737), CW_binding_1 (pfam01473), PBP1_BmpA_Med_like