myRT

myRT report for GCA_002393785.1_ASM239378v1

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Seq: DGTT01000071.1 TPA_asm: Kandleria sp. UBA4329 UBA4329_contig_9255, whole genome shotgun sequence (52426 bp)
Overview 1 RT 1: 25605-34097 bp Neighborhood of RT #1 [25605, 34111] ManZ DUF956 RVT-GII INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_5 INT_RitC_C_like RVT-GII GIIM aMBF1 LexA Feature: gene Location: 25605-26519 bp Feature: domain Description: ManZ Location: 25614-26517 bp Feature: domain Description: ManZ Location: 2561 4-2651 7 bp Feature: gene Location: 26537-26908 bp Feature: domain Description: DUF956 Location: 26540-26882 bp Feature: domain Description: DUF956 Location: 26540-26882 bp Feature: gene Location: 27530-28216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27731-28202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27731 -28202 bp Feature: gene Location: 28340-29542 bp Feature: domain Description: INT_RitA_C_like Location: 29000-29513 bp Feature: domain Description: INT_RitA_C_like Location: 29000-2951 3 bp Feature: gene Location: 29548-30504 bp Feature: domain Description: INT_RitB_C_like Location: 29872-30439 bp Feature: domain Description: INT_RitB_C_like Location: 29872-30439 bp Feature: gene Location: 30644-31516 bp Feature: domain Description: Phage_int_SAM_5 Location: 30662-30815 bp Feature: domain Description: Phage_int_SAM_5 Location: 30662-3081 5 bp Feature: domain Description: INT_RitC_C_like Location: 30890-31448 bp Feature: domain Description: INT_RitC_C_like Location: 30890-31 448 bp Feature: gene Location: 31680-32273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31683-31785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 683-31 785 bp Feature: domain Description: GIIM Note: maturase Location: 31839-32055 bp Feature: domain Description: GIIM Note: maturase Location: 31 839-32055 bp Feature: gene Location: 32440-33402 bp Feature: domain Description: aMBF1 Location: 32461-32608 bp Feature: domain Description: aMBF1 Location: 32461 -32608 bp Feature: gene Location: 33500-34111 bp Feature: domain Description: LexA Location: 33551-34097 bp Feature: domain Description: LexA Location: 33551 -34097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManZ (COG3716), DUF956 (pfam06115), RVT-GII, INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_5 (pfam13102), INT_RitC_C_like (cd01182), GIIM (pfam08388), aMBF1 (COG1813), LexA (COG1974)