myRT

myRT report for GCA_002396925.1_ASM239692v1

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Seq: DGZC01000099.1 TPA_asm: Syntrophomonas sp. UBA4990 UBA4990_contig_12409, whole genome shotgun sequence (4761 bp)
Overview 1 RT 1: 478-4268 bp Neighborhood of RT #1 [478, 4327] RVT-GII GIIM HTH_17 XerD Phage_int_SAM_3 INT_ICEBs1_C_like Feature: gene Location: 478-1899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1 453 bp Feature: domain Description: GIIM Note: maturase Location: 1510-1735 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 0-1 735 bp Feature: gene Location: 2527-2748 bp Feature: domain Description: HTH_17 Location: 2584-2722 bp Feature: domain Description: HTH_1 7 Location: 2584-2722 bp Feature: gene Location: 2852-4327 bp Feature: domain Description: XerD Location: 3062-3359 bp Feature: domain Description: XerD Location: 3062-3359 bp Feature: domain Description: Phage_int_SAM_3 Location: 3374-3542 bp Feature: domain Description: Phage_int_SAM_3 Location: 3374-3542 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3713-4268 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 371 3-4268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), XerD (COG4974), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388)

Seq: DGZC01000036.1 TPA_asm: Syntrophomonas sp. UBA4990 UBA4990_contig_2539, whole genome shotgun sequence (56935 bp)
Overview 1 RT 1: 50595-55368 bp Neighborhood of RT #1 [50595, 56933] PRK06635 RVT-GII GIIM DUF2442 SLH SLH SLH Feature: gene Location: 50595-51830 bp Feature: domain Description: PRK06635 Location: 50613-51813 bp Feature: domain Description: PRK06635 Location: 50613-51813 bp Feature: gene Location: 52436-52567 bp Feature: gene Location: 52788-54080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53088-53721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53088-5372 1 bp Feature: domain Description: GIIM Note: maturase Location: 53844-54021 bp Feature: domain Description: GIIM Note: maturase Location: 53844-5402 1 bp Feature: gene Location: 54387-54644 bp Feature: domain Description: DUF2442 Location: 54405-54579 bp Feature: domain Description: DUF2 442 Location: 54405-54579 bp Feature: gene Location: 54684-56933 bp Feature: domain Description: SLH Location: 54882-55008 bp Feature: domain Description: SLH Location: 54882 -55008 bp Feature: domain Description: SLH Location: 55062-55191 bp Feature: domain Description: SLH Location: 55062 -55191 bp Feature: domain Description: SLH Location: 55254-55368 bp Feature: domain Description: SLH Location: 552 54-55368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06635 (aspartate kinase; Reviewed), RVT-GII, GIIM (pfam08388), DUF2442 (pfam10387), SLH (pfam00395)

Seq: DGZC01000032.1 TPA_asm: Syntrophomonas sp. UBA4990 UBA4990_contig_4715, whole genome shotgun sequence (54013 bp)
Overview 1 RT 1: 13189-16425 bp Neighborhood of RT #1 [13189, 16451] YkfC RVT-GII GIIM biotinyl_domain BirA2 Feature: gene Location: 13189-13350 bp Feature: gene Location: 13552-13806 bp Feature: domain Description: YkfC Location: 13681-13804 bp Feature: domain Description: YkfC Location: 13 681-13 804 bp Feature: gene Location: 13926-14969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13929-14523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 929-14523 bp Feature: domain Description: GIIM Note: maturase Location: 14580-14802 bp Feature: domain Description: GIIM Note: maturase Location: 14580-14802 bp Feature: gene Location: 15162-15374 bp Feature: domain Description: biotinyl_domain Location: 15177-15369 bp Feature: domain Description: biotinyl_domain Location: 15177-153 69 bp Feature: gene Location: 15525-16451 bp Feature: domain Description: BirA2 Location: 15720-16425 bp Feature: domain Description: BirA2 Location: 15720-16425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), biotinyl_domain (cd06850), BirA2 (COG0340)