myRT

myRT report for GCA_002399935.1_ASM239993v1

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Seq: DHEP01000021.1 TPA_asm: Ruminococcaceae bacterium UBA4847 UBA4847_contig_12141, whole genome shotgun sequence (12091 bp)
Overview 1 RT 1: 3-4152 bp Neighborhood of RT #1 [3, 4163] TraG-D_C RVT-GII HNHc VirD4 Feature: gene Location: 3-302 bp Feature: domain Description: TraG-D_C Location: 165-300 bp Feature: domain Description: TraG-D_C Location: 1 65-300 bp Feature: gene Location: 443-2356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1 493 bp Feature: domain Description: HNHc Note: nucleases Location: 2072-2240 bp Feature: domain Description: HNHc Note: nucleases Location: 2072-2240 bp Feature: gene Location: 2783-3076 bp Feature: gene Location: 3135-4163 bp Feature: domain Description: VirD4 Location: 3369-4152 bp Feature: domain Description: VirD4 Location: 3369-41 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507)

Seq: DHEP01000012.1 TPA_asm: Ruminococcaceae bacterium UBA4847 UBA4847_contig_4361, whole genome shotgun sequence (11262 bp)
Overview 1 RT 1: 4118-8011 bp Neighborhood of RT #1 [4118, 8193] NLPC_P60 GH25_LytC-like RVT-DGRs Avd_like PHA00653 Feature: gene Location: 4118-4909 bp Feature: domain Description: NLPC_P60 Location: 4313-4559 bp Feature: domain Description: NLPC_P60 Location: 4313-4559 bp Feature: gene Location: 5023-5289 bp Feature: domain Description: GH25_LytC-like Location: 5041-5227 bp Feature: domain Description: GH2 5_LytC-like Location: 5041-52 2 7 bp Feature: gene Location: 5270-6316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5477-6083 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5477-6083 bp Feature: gene Location: 6616-6954 bp Feature: domain Description: Avd_like Location: 6634-6937 bp Feature: domain Description: Avd_like Location: 6634-6937 bp Feature: gene Location: 7012-8193 bp Feature: domain Description: PHA00653 Location: 7123-8011 bp Feature: domain Description: PHA00653 Location: 712 3-8011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NLPC_P60 (pfam00877), GH25_LytC-like (cd06414), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)