myRT

myRT report for GCA_002400455.1_ASM240045v1

Download annotations/find similar RTs

Seq: DGQQ01000155.1 TPA_asm: Competibacteraceae bacterium UBA4410 UBA4410_contig_160, whole genome shotgun sequence (6457 bp)
Overview 1 RT 1: 155-5964 bp Neighborhood of RT #1 [155, 5964] RVT-GII GIIM DUF4096 COG3293 PinE Recombinase Zn_ribbon_recom HTH_17 HTH_17 RVT_N RVT-GII Feature: gene Location: 155-634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158-425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58-425 bp Feature: domain Description: GIIM Note: maturase Location: 476-584 bp Feature: domain Description: GIIM Note: maturase Location: 476-584 bp Feature: gene Location: 811-1632 bp Feature: domain Description: DUF4096 Location: 829-1054 bp Feature: domain Description: DUF4096 Location: 829-1 054 bp Feature: domain Description: COG3293 Location: 1216-1615 bp Feature: domain Description: COG3293 Location: 1 21 6-1 61 5 bp Feature: gene Location: 1699-1872 bp Feature: gene Location: 2213-2641 bp Feature: domain Description: PinE Location: 2261-2561 bp Feature: domain Description: PinE Location: 2261 -2561 bp Feature: gene Location: 2638-4422 bp Feature: domain Description: Recombinase Location: 2794-3151 bp Feature: domain Description: Recombinase Location: 2794-31 51 bp Feature: domain Description: Zn_ribbon_recom Location: 3205-3373 bp Feature: domain Description: Zn_ribbon_recom Location: 3205-3373 bp Feature: domain Description: HTH_17 Location: 4084-4159 bp Feature: domain Description: HTH_1 7 Location: 4084-41 59 bp Feature: domain Description: HTH_17 Location: 4267-4381 bp Feature: domain Description: HTH_1 7 Location: 4267-4381 bp Feature: gene Location: 4434-5018 bp Feature: RT Description: RVT_N Location: 4482-4719 bp Feature: RT Description: RVT_N Location: 4482-471 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4770-5010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4770-501 0 bp Feature: gene Location: 5605-5823 bp Feature: gene Location: 5833-5964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4096 (pfam13340), COG3293 (Transposase ), PinE (COG1961), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT_N (pfam13655)