myRT

myRT report for GCA_002401065.1_ASM240106v1

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Seq: NVSB01000033.1 Gammaproteobacteria bacterium isolate NORP152 Contig_source1383C_2723, whole genome shotgun sequence (33869 bp)
Overview 1 RT 1: 3107-11141 bp Neighborhood of RT #1 [3107, 11141] PhoD PhoD group_II_RT_mat RVT-GII GIIM Reprolysin_4 Feature: gene Location: 3107-5455 bp Feature: domain Description: PhoD Location: 3116-4199 bp Feature: domain Description: PhoD Location: 31 1 6-41 99 bp Feature: domain Description: PhoD Location: 4724-5129 bp Feature: domain Description: PhoD Location: 4724-51 29 bp Feature: gene Location: 5980-6129 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5995-6130 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5995-61 30 bp Feature: gene Location: 6878-8092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7061-7664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7061 -7664 bp Feature: domain Description: GIIM Note: maturase Location: 7712-7928 bp Feature: domain Description: GIIM Note: maturase Location: 771 2-7928 bp Feature: gene Location: 8230-10647 bp Feature: domain Description: Reprolysin_4 Location: 8902-9478 bp Feature: domain Description: Reprolysin_4 Location: 8902-9478 bp Feature: gene Location: 10734-11141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhoD (pfam09423), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), Reprolysin_4 (pfam13583)

Seq: NVSB01000078.1 Gammaproteobacteria bacterium isolate NORP152 Contig_source1383C_19386, whole genome shotgun sequence (5815 bp)
Overview 1 RT 1: 789-4386 bp Neighborhood of RT #1 [789, 4415] ExeA RVT-GII GIIM PHA02517 EAL Feature: gene Location: 789-1619 bp Feature: domain Description: ExeA Location: 801-1476 bp Feature: domain Description: ExeA Location: 801-1476 bp Feature: gene Location: 1630-1821 bp Feature: gene Location: 1963-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2236-2968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 36-2 968 bp Feature: domain Description: GIIM Note: maturase Location: 3040-3241 bp Feature: domain Description: GIIM Note: maturase Location: 3040-32 41 bp Feature: gene Location: 3561-4034 bp Feature: domain Description: PHA02517 Location: 3570-4008 bp Feature: domain Description: PHA02 517 Location: 3570-4008 bp Feature: gene Location: 4197-4415 bp Feature: domain Description: EAL Location: 4227-4386 bp Feature: domain Description: EAL Location: 42 2 7-4386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), EAL (smart00052), ExeA (COG3267)

Seq: NVSB01000070.1 Gammaproteobacteria bacterium isolate NORP152 Contig_source1383C_11305, whole genome shotgun sequence (9525 bp)
Overview 1 RT 1: 1281-5744 bp Neighborhood of RT #1 [1281, 5752] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM HNHc DUF4136 Feature: gene Location: 1281-2266 bp Feature: domain Description: INT_RitB_C_like Location: 1617-2073 bp Feature: domain Description: INT_RitB_C_like Location: 1617-2073 bp Feature: gene Location: 2259-3316 bp Feature: domain Description: Phage_int_SAM_1 Location: 2529-2760 bp Feature: domain Description: Phage_int_SAM_1 Location: 2529-2760 bp Feature: domain Description: INT_RitA_C_like Location: 2853-3192 bp Feature: domain Description: INT_RitA_C_like Location: 2853 -3 192 bp Feature: gene Location: 3544-4500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3547-3829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 547-3 829 bp Feature: domain Description: GIIM Note: maturase Location: 3883-4117 bp Feature: domain Description: GIIM Note: maturase Location: 3 883 -4117 bp Feature: domain Description: HNHc Note: nucleases Location: 4327-4489 bp Feature: domain Description: HNHc Note: nucleases Location: 43 27-4489 bp Feature: gene Location: 4598-4804 bp Feature: gene Location: 5192-5752 bp Feature: domain Description: DUF4136 Location: 5387-5744 bp Feature: domain Description: DUF413 6 Location: 53 87-5744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4136 (pfam13590)

Seq: NVSB01000063.1 Gammaproteobacteria bacterium isolate NORP152 Contig_source1383C_7949, whole genome shotgun sequence (13221 bp)
Overview 1 RT 1: 19-2209 bp Neighborhood of RT #1 [19, 3141] RVT-GII GIIM UPF0236 Feature: gene Location: 19-1182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-793 bp Feature: domain Description: GIIM Note: maturase Location: 874-1096 bp Feature: domain Description: GIIM Note: maturase Location: 874 -1096 bp Feature: gene Location: 1343-1579 bp Feature: gene Location: 1675-3141 bp Feature: domain Description: UPF0236 Location: 1924-2209 bp Feature: domain Description: UPF0236 Location: 1924 -2209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), RVT-GII, GIIM (pfam08388)