myRT

myRT report for GCA_002401265.1_ASM240126v1

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Seq: NVSN01000010.1 Thiotrichales bacterium isolate NORP140 Contig_source1382A_918, whole genome shotgun sequence (75149 bp)
Overview 1 RT 1: 1263-6988 bp Neighborhood of RT #1 [1263, 7181] RhtB RVT_N RVT-GII COG4584 Feature: gene Location: 1263-1580 bp Feature: gene Location: 1653-2237 bp Ori: PCI13376.1 Feature: domain Description: RhtB Location: 1659-2229 bp Feature: domain Description: RhtB Location: 1 659-2229 bp Feature: gene Location: 2412-3937 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2460-2697 bp Feature: domain Description: RVT_N Location: 2460-2697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748-3108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748-31 08 bp Feature: gene Location: 5067-5960 bp Feature: gene Location: 6124-7181 bp Feature: domain Description: COG4584 Location: 6133-6988 bp Feature: domain Description: COG4584 Location: 61 33-6988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhtB (COG1280), RVT_N (pfam13655), RVT-GII, COG4584 (Transposase )

Seq: NVSN01000002.1 Thiotrichales bacterium isolate NORP140 Contig_source1382A_168, whole genome shotgun sequence (178231 bp)
Overview 1 RT 1: 26346-32606 bp Neighborhood of RT #1 [26346, 32606] DDE_Tnp_IS66 RVT-GII Feature: gene Location: 26346-27152 bp Feature: gene Location: 27520-28969 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27997-28240 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 7997-2 82 40 bp Feature: gene Location: 28987-29607 bp Ori: PCI14734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29326-29551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 932 6-2 9551 bp Feature: gene Location: 29895-30806 bp Feature: gene Location: 31513-32606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: NVSN01000052.1 Thiotrichales bacterium isolate NORP140 Contig_source1383C_889, whole genome shotgun sequence (77245 bp)
Overview 1 RT 1: 3822-9167 bp Neighborhood of RT #1 [3822, 9360] HicB RVT_N RVT-GII COG4584 Feature: gene Location: 3822-4151 bp Ori: PCI10856.1 Feature: domain Description: HicB Location: 4002-4125 bp Feature: domain Description: HicB Location: 4002-4125 bp Feature: gene Location: 4141-4395 bp Feature: gene Location: 4591-6116 bp Gene: ltrA Feature: domain Description: RVT_N Location: 4639-4876 bp Feature: domain Description: RVT_N Location: 463 9-4876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4927-5287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4927-5287 bp Feature: gene Location: 7246-8139 bp Feature: gene Location: 8303-9360 bp Feature: domain Description: COG4584 Location: 8312-9167 bp Feature: domain Description: COG4584 Location: 83 12-9167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT_N (pfam13655), RVT-GII, COG4584 (Transposase )

Seq: NVSN01000009.1 Thiotrichales bacterium isolate NORP140 Contig_source1382A_764, whole genome shotgun sequence (82546 bp)
Overview 1 RT 1: 1322-5824 bp Neighborhood of RT #1 [1322, 5824] Cas2_I_II_III Cas2_I_II_III RVT-CRISPR Cas1_I-II-III SAVED Feature: gene Location: 1322-1594 bp Ori: PCI13437.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 1328-1553 bp Feature: domain Description: Cas2_I_II_III Location: 1328-1553 bp Feature: gene Location: 1597-1881 bp Ori: PCI13438.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 1618-1828 bp Feature: domain Description: Cas2_I_II_III Location: 1618-1828 bp Feature: gene Location: 1878-4052 bp Ori: PCI13439.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2088-2694 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2088-2694 bp Feature: domain Description: Cas1_I-II-III Location: 3060-4014 bp Feature: domain Description: Cas1_I-II-III Location: 3060-4 014 bp Feature: gene Location: 4960-5598 bp Ori: PCI13440.1 Feature: domain Description: SAVED Location: 5182-5566 bp Feature: domain Description: SAVED Location: 5182-5566 bp Feature: gene Location: 5585-5824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), SAVED (pfam18145)

Seq: NVSN01000018.1 Thiotrichales bacterium isolate NORP140 Contig_source1382A_1978, whole genome shotgun sequence (46471 bp)
Overview 1 RT 1: 7842-11970 bp Neighborhood of RT #1 [7842, 11970] RVT-UG7 Feature: gene Location: 7842-8612 bp Feature: gene Location: 8602-9075 bp Feature: gene Location: 9290-10234 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9722-10124 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9722-10124 bp Feature: gene Location: 11154-11525 bp Feature: gene Location: 11653-11970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: NVSN01000012.1 Thiotrichales bacterium isolate NORP140 Contig_source1382A_1291, whole genome shotgun sequence (61577 bp)
Overview 1 RT 1: 420-5585 bp Neighborhood of RT #1 [420, 5872] DUF2778 Tae4 RVT_N RVT-GII GIIM NT_KNTase_like Feature: gene Location: 420-881 bp Ori: PCI13147.1 Feature: domain Description: DUF2778 Location: 489-840 bp Feature: domain Description: DUF2778 Location: 489-840 bp Feature: gene Location: 1183-1695 bp Ori: PCI13148.1 Feature: domain Description: Tae4 Location: 1282-1684 bp Feature: domain Description: Tae4 Location: 1282-16 84 bp Feature: gene Location: 1853-3346 bp Gene: ltrA Feature: domain Description: RVT_N Location: 1910-2150 bp Feature: domain Description: RVT_N Location: 1910-2150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198-2822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198-2822 bp Feature: domain Description: GIIM Note: maturase Location: 2882-3110 bp Feature: domain Description: GIIM Note: maturase Location: 2882-3110 bp Feature: gene Location: 4340-4618 bp Feature: gene Location: 5189-5872 bp Feature: domain Description: NT_KNTase_like Location: 5243-5585 bp Feature: domain Description: NT_KNTase_like Location: 5243-5585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2778 (pfam10908), Tae4 (pfam14113), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NT_KNTase_like (cd05403)