myRT

myRT report for GCA_002401765.1_ASM240176v1

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Seq: NVTY01000036.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_465, whole genome shotgun sequence (117457 bp)
Overview 1 RT 1: 112260-116431 bp Neighborhood of RT #1 [112260, 116431] RVT_N RVT-GII GIIM SDR_c Feature: gene Location: 112260-112796 bp Feature: gene Location: 113320-113535 bp Feature: gene Location: 113540-115210 bp Ori: PCI66621.1 Gene: ltrA Feature: domain Description: RVT_N Location: 113594-113834 bp Feature: domain Description: RVT_N Location: 1 1 3594-1 1 3834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113885-114515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3885-1 1 451 5 bp Feature: domain Description: GIIM Note: maturase Location: 114587-114818 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 4587-1 1 481 8 bp Feature: gene Location: 115329-116087 bp Ori: PCI66622.1 Feature: domain Description: SDR_c Location: 115368-116058 bp Feature: domain Description: SDR_c Location: 1 1 5368-1 1 6058 bp Feature: gene Location: 116171-116431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SDR_c (cd05233)

Seq: NVTY01000059.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_6481, whole genome shotgun sequence (15977 bp)
Overview 1 RT 1: 13357-15977 bp Neighborhood of RT #1 [13357, 15977] DDE_Tnp_IS66 RVT-GII Feature: gene Location: 13357-13554 bp Feature: gene Location: 13596-15045 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14073-14316 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14073-14316 bp Feature: gene Location: 15063-15683 bp Ori: PCI64857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15402-15627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15402 -1562 7 bp Feature: gene Location: 15887-15977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: NVTY01000028.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_169, whole genome shotgun sequence (195958 bp)
Overview 1 RT 1: 99794-105442 bp Neighborhood of RT #1 [99794, 105483] Trypsin_2 RVT-UG7 GST_N_2GST_N Feature: gene Location: 99794-100771 bp Ori: PCI68625.1 Feature: domain Description: Trypsin_2 Location: 99929-100502 bp Feature: domain Description: Trypsin_2 Location: 99929-100502 bp Feature: gene Location: 100876-101646 bp Feature: gene Location: 101636-103267 bp Ori: PCI68627.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 102068-102473 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 102068-102473 bp Feature: gene Location: 104187-104558 bp Feature: gene Location: 105085-105483 bp Ori: PCI68629.1 Feature: domain Description: GST_N_2GST_N Location: 105214-105442 bp Feature: domain Description: GST_N_2GST_N Location: 105214-105442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-UG7, GST_N_2GST_N (cd03041)

Seq: NVTY01000006.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1382A_1097, whole genome shotgun sequence (67782 bp)
Overview 1 RT 1: 1347-5114 bp Neighborhood of RT #1 [1347, 5164] RVT-GII Response_reg MidA Feature: gene Location: 1347-1595 bp Feature: gene Location: 1733-2299 bp Feature: gene Location: 2699-3572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2702-3092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2702-3092 bp Feature: gene Location: 3499-3798 bp Ori: PCI71685.1 Feature: domain Description: Response_reg Location: 3520-3718 bp Feature: domain Description: Response_reg Location: 3520-3718 bp Feature: gene Location: 4019-5164 bp Ori: PCI71686.1 Feature: domain Description: MidA Location: 4040-5114 bp Feature: domain Description: MidA Location: 4 04 0-5114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Response_reg (pfam00072), MidA (COG1565)

Seq: NVTY01000040.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_1057, whole genome shotgun sequence (68462 bp)
Overview 1 RT 1: 7317-12700 bp Neighborhood of RT #1 [7317, 12765] DUF2778 Tae4 RVT_N RVT-GII GIIM NT_KNTase_like HEPN Feature: gene Location: 7317-7778 bp Ori: PCI65932.1 Feature: domain Description: DUF2778 Location: 7386-7737 bp Feature: domain Description: DUF2778 Location: 7386-7737 bp Feature: gene Location: 8080-8592 bp Ori: PCI65933.1 Feature: domain Description: Tae4 Location: 8179-8581 bp Feature: domain Description: Tae4 Location: 8179-85 81 bp Feature: gene Location: 8750-10243 bp Gene: ltrA Feature: domain Description: RVT_N Location: 8807-9047 bp Feature: domain Description: RVT_N Location: 8807-9047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9095-9719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9095 -9719 bp Feature: domain Description: GIIM Note: maturase Location: 9779-10007 bp Feature: domain Description: GIIM Note: maturase Location: 9779-10007 bp Feature: gene Location: 11237-11515 bp Feature: gene Location: 11881-12765 bp Ori: PCI65935.1 Feature: domain Description: NT_KNTase_like Location: 11938-12277 bp Feature: domain Description: NT_KNTase_like Location: 11938-12277 bp Feature: domain Description: HEPN Location: 12373-12700 bp Feature: domain Description: HEPN Location: 12373-12700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2778 (pfam10908), Tae4 (pfam14113), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NT_KNTase_like (cd05403), HEPN (smart00748)

Seq: NVTY01000034.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_317, whole genome shotgun sequence (141008 bp)
Overview 1 RT 1: 61763-65512 bp 2 RT 2: 98142-106700 bp Neighborhood of RT #1 [61763, 65526] ZnF_CDGSH ZnF_CDGSH YhaK RVT-GII HicB HicA_toxin Neighborhood of RT #2 [98142, 106700] Lon_rel_chp TIGR02687 RVT-UG5 COG2865 Feature: gene Location: 61763-61996 bp Ori: PCI66969.1 Feature: domain Description: ZnF_CDGSH Location: 61787-61886 bp Feature: domain Description: ZnF_CDGSH Location: 6 1787-6 1886 bp Feature: domain Description: ZnF_CDGSH Location: 61919-61994 bp Feature: domain Description: ZnF_CDGSH Location: 6 1919-6 1994 bp Feature: gene Location: 62016-62744 bp Ori: PCI67032.1 Feature: domain Description: YhaK Location: 62052-62739 bp Feature: domain Description: YhaK Location: 6 2052-6 2739 bp Feature: gene Location: 63814-64556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63817-64117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 3817-6 4117 bp Feature: gene Location: 64970-65293 bp Ori: PCI66970.1 Feature: domain Description: HicB Location: 64973-65282 bp Feature: domain Description: HicB Location: 6 4973-6 5282 bp Feature: gene Location: 65290-65526 bp Ori: PCI66971.1 Feature: domain Description: HicA_toxin Location: 65338-65512 bp Feature: domain Description: HicA_toxin Location: 6 5338-6 5512 bp Feature: gene Location: 98142-99176 bp Feature: domain Description: Lon_rel_chp Location: 98163-99177 bp Feature: domain Description: Lon_rel_chp Location: 9816 3-99177 bp Feature: gene Location: 99286-101907 bp Ori: PCI67000.1 Feature: domain Description: TIGR02687 Location: 99301-101875 bp Feature: domain Description: TIGR026 87 Location: 99301-101875 bp Feature: gene Location: 102031-105052 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102526-103018 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102526 -103018 bp Feature: gene Location: 105049-106497 bp Ori: PCI67001.1 Feature: domain Description: COG2865 Location: 105061-106444 bp Feature: domain Description: COG286 5 Location: 10506 1-106 444 bp Feature: gene Location: 106488-106700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnF_CDGSH (smart00704), YhaK (COG1741), RVT-GII, HicB (pfam05534), HicA_toxin (pfam07927), Lon_rel_chp (TIGR02653), TIGR02687 (TIGR02687 family protein), RVT-UG5, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: NVTY01000023.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1382A_18568, whole genome shotgun sequence (6438 bp)
Overview 1 RT 1: 1-2178 bp Neighborhood of RT #1 [1, 2204] RVT-GII GIIM HicB Feature: gene Location: 1-614 bp Feature: gene Location: 659-1435 bp Ori: PCI70091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-896 bp Feature: domain Description: GIIM Note: maturase Location: 953-1178 bp Feature: domain Description: GIIM Note: maturase Location: 953-117 8 bp Feature: gene Location: 1631-1885 bp Feature: gene Location: 1875-2204 bp Ori: PCI70093.1 Feature: domain Description: HicB Location: 2055-2178 bp Feature: domain Description: HicB Location: 2055-217 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HicB (pfam05534)

Seq: NVTY01000035.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1383C_431, whole genome shotgun sequence (122534 bp)
Overview 1 RT 1: 2588-5956 bp 2 RT 2: 29199-33701 bp Neighborhood of RT #1 [2588, 5956] YiaG RelE RVT-AbiP2 Neighborhood of RT #2 [29199, 33701] Cas2_I_II_III Cas2_I_II_III RVT-CRISPR Cas1_I-II-III SAVED Feature: gene Location: 2588-2875 bp Ori: PCI66697.1 Feature: domain Description: YiaG Location: 2642-2858 bp Feature: domain Description: YiaG Location: 2642-28 58 bp Feature: gene Location: 2856-3209 bp Ori: PCI66698.1 Feature: domain Description: RelE Location: 2988-3180 bp Feature: domain Description: RelE Location: 298 8 -318 0 bp Feature: gene Location: 3401-4897 bp Ori: PCI66699.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3818-4265 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 38 18 -4265 bp Feature: gene Location: 5007-5576 bp Feature: gene Location: 5672-5956 bp Feature: gene Location: 29199-29471 bp Ori: PCI66714.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 29205-29430 bp Feature: domain Description: Cas2_I_II_III Location: 29205-29430 bp Feature: gene Location: 29474-29758 bp Ori: PCI66715.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 29495-29705 bp Feature: domain Description: Cas2_I_II_III Location: 29495-29705 bp Feature: gene Location: 29755-31929 bp Ori: PCI66716.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29965-30571 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29965-30571 bp Feature: domain Description: Cas1_I-II-III Location: 30937-31891 bp Feature: domain Description: Cas1_I-II-III Location: 30937-318 91 bp Feature: gene Location: 32837-33475 bp Ori: PCI66717.1 Feature: domain Description: SAVED Location: 33059-33443 bp Feature: domain Description: SAVED Location: 33059-33443 bp Feature: gene Location: 33462-33701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YiaG (COG2944), RelE (pfam06296), RVT-AbiP2, Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), SAVED (pfam18145)

Seq: NVTY01000002.1 Thiotrichaceae bacterium isolate NORP103 Contig_source1382A_374, whole genome shotgun sequence (122774 bp)
Overview 1 RT 1: 116946-121685 bp Neighborhood of RT #1 [116946, 122165] RVT_N RVT-GII GIIM SDR_c RVT-GII Feature: gene Location: 116946-117482 bp Feature: gene Location: 118006-118221 bp Feature: gene Location: 118226-119896 bp Ori: PCI72330.1 Gene: ltrA Feature: domain Description: RVT_N Location: 118280-118520 bp Feature: domain Description: RVT_N Location: 118280-118520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118571-119201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118571-119 201 bp Feature: domain Description: GIIM Note: maturase Location: 119273-119504 bp Feature: domain Description: GIIM Note: maturase Location: 119 273-119 504 bp Feature: gene Location: 120015-120773 bp Ori: PCI72331.1 Feature: domain Description: SDR_c Location: 120054-120744 bp Feature: domain Description: SDR_c Location: 120054-120744 bp Feature: gene Location: 120857-122165 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121136-121685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121136-121685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SDR_c (cd05233)