myRT

myRT report for GCA_002402695.1_ASM240269v1

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Seq: DHGI01000013.1 TPA_asm: Spirochaetia bacterium UBA4802 UBA4802_contig_15229, whole genome shotgun sequence (19098 bp)
Overview 1 RT 1: 1593-6703 bp Neighborhood of RT #1 [1593, 6703] NptA RVT-Retrons Feature: gene Location: 1593-3179 bp Feature: domain Description: NptA Location: 1611-3144 bp Feature: domain Description: NptA Location: 1 61 1 -31 44 bp Feature: gene Location: 3508-3726 bp Feature: gene Location: 4027-5721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4162-4777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 62-4777 bp Feature: gene Location: 5884-6279 bp Feature: gene Location: 6476-6703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NptA (COG1283), RVT-Retrons

Seq: DHGI01000014.1 TPA_asm: Spirochaetia bacterium UBA4802 UBA4802_contig_22338, whole genome shotgun sequence (20201 bp)
Overview 1 RT 1: 6411-11285 bp Neighborhood of RT #1 [6411, 11434] integrase_gron RVT-GII GIIM RHH_1 Feature: gene Location: 6411-6629 bp Feature: domain Description: integrase_gron Location: 6417-6594 bp Feature: domain Description: integrase_gron Location: 6417-6594 bp Feature: gene Location: 6828-8867 bp Feature: gene Location: 9001-10383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9364-10000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9364-10000 bp Feature: domain Description: GIIM Note: maturase Location: 10075-10288 bp Feature: domain Description: GIIM Note: maturase Location: 10075-102 88 bp Feature: gene Location: 10544-11035 bp Feature: gene Location: 11147-11434 bp Feature: domain Description: RHH_1 Location: 11192-11285 bp Feature: domain Description: RHH_1 Location: 11192 -112 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388)

Seq: DHGI01000074.1 TPA_asm: Spirochaetia bacterium UBA4802 UBA4802_contig_27746, whole genome shotgun sequence (61622 bp)
Overview 1 RT 1: 3121-6819 bp Neighborhood of RT #1 [3121, 6827] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 3121-3510 bp Feature: gene Location: 3960-4088 bp Feature: gene Location: 4249-5688 bp Feature: domain Description: DUF1566 Location: 4306-4426 bp Feature: domain Description: DUF1566 Location: 43 06-4426 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4717-5416 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4717-5416 bp Feature: gene Location: 5792-6133 bp Feature: domain Description: Avd_like Location: 5819-6122 bp Feature: domain Description: Avd_like Location: 5819-6122 bp Feature: gene Location: 6201-6827 bp Feature: domain Description: DUF1566 Location: 6561-6819 bp Feature: domain Description: DUF1566 Location: 6561-6819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)