myRT

myRT report for GCA_002403715.1_ASM240371v1

Download annotations/find similar RTs

Seq: DHII01000022.1 TPA_asm: Sphingobacterium sp. UBA4750 UBA4750_contig_1183, whole genome shotgun sequence (47225 bp)
Overview 1 RT 1: 549-4888 bp Neighborhood of RT #1 [549, 5349] RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4141 Feature: gene Location: 549-2300 bp Feature: RT Description: RVT_N Location: 693-936 bp Feature: RT Description: RVT_N Location: 693-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 -1 629 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 91 4 bp Feature: gene Location: 2297-4690 bp Feature: domain Description: Bac_Flav_CT_G Location: 2414-4667 bp Feature: domain Description: Bac_Flav_CT_G Location: 241 4-4667 bp Feature: gene Location: 4717-5349 bp Feature: domain Description: DUF4141 Location: 4732-4888 bp Feature: domain Description: DUF41 41 Location: 4732-4888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DHII01000201.1 TPA_asm: Sphingobacterium sp. UBA4750 UBA4750_contig_1246, whole genome shotgun sequence (31739 bp)
Overview 1 RT 1: 12851-16664 bp Neighborhood of RT #1 [12851, 16664] DUF932 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 12851-13798 bp Feature: domain Description: DUF932 Location: 13130-13775 bp Feature: domain Description: DUF932 Location: 13130-13775 bp Feature: gene Location: 13826-13984 bp Feature: gene Location: 14341-16149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14605-15427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14605-1542 7 bp Feature: domain Description: Intron_maturas2 Location: 15505-15838 bp Feature: domain Description: Intron_maturas2 Location: 15505-15838 bp Feature: domain Description: HNHc Note: nucleases Location: 15982-16129 bp Feature: domain Description: HNHc Note: nucleases Location: 15982 -1612 9 bp Feature: gene Location: 16162-16296 bp Feature: gene Location: 16470-16664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DHII01000004.1 TPA_asm: Sphingobacterium sp. UBA4750 UBA4750_contig_923, whole genome shotgun sequence (5760 bp)
Overview 1 RT 1: 733-5675 bp Neighborhood of RT #1 [733, 5675] HATPase_c_3 HSDR_N_2 RVT-Retrons Feature: gene Location: 733-2766 bp Feature: domain Description: HATPase_c_3 Location: 796-1195 bp Feature: domain Description: HATPase_c_3 Location: 796-1195 bp Feature: domain Description: HSDR_N_2 Location: 2290-2443 bp Feature: domain Description: HSDR_N_2 Location: 2290-2443 bp Feature: gene Location: 2828-4075 bp Feature: gene Location: 4253-5344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4472-5102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4472-5102 bp Feature: gene Location: 5385-5675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HATPase_c_3 (pfam13589), HSDR_N_2 (pfam13588)