myRT

myRT report for GCA_002403795.1_ASM240379v1

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Seq: DHIL01000054.1 TPA_asm: Enterobacteriaceae bacterium UBA4747 UBA4747_contig_128, whole genome shotgun sequence (34230 bp)
Overview 1 RT 1: 407-3445 bp Neighborhood of RT #1 [407, 3486] RVT-Retrons HicB PRK13605 Feature: gene Location: 407-580 bp Feature: gene Location: 1016-1954 bp Feature: gene Location: 1944-2855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2043-2622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2043-2622 bp Feature: gene Location: 2883-3074 bp Feature: domain Description: HicB Location: 2931-3045 bp Feature: domain Description: HicB Location: 2931 -3045 bp Feature: gene Location: 3199-3486 bp Feature: domain Description: PRK13605 Location: 3241-3445 bp Feature: domain Description: PRK1 3605 Location: 3241 -3445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HicB (pfam05534), PRK13605 (endoribonuclease SymE; Provisional)

Seq: DHIL01000058.1 TPA_asm: Enterobacteriaceae bacterium UBA4747 UBA4747_contig_134, whole genome shotgun sequence (167376 bp)
Overview 1 RT 1: 109298-115849 bp Neighborhood of RT #1 [109298, 118617] PRK10722 BaeS RVT-Retrons WGR_DNA_ligase Feature: gene Location: 109298-110017 bp Feature: domain Description: PRK10722 Location: 109337-110006 bp Feature: domain Description: PRK1072 2 Location: 109337-110006 bp Feature: gene Location: 110029-111420 bp Feature: domain Description: BaeS Location: 110443-111406 bp Feature: domain Description: BaeS Location: 110443-111406 bp Feature: gene Location: 111972-113672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112524-113136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112 52 4-113136 bp Feature: gene Location: 113991-115613 bp Feature: gene Location: 115603-118617 bp Feature: domain Description: WGR_DNA_ligase Location: 115618-115849 bp Feature: domain Description: WGR_DNA_ligase Location: 115618-115849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10722 (two-component system QseEF-associated lipoprotein QseG), BaeS (COG0642), RVT-Retrons, WGR_DNA_ligase (cd07998)

Seq: DHIL01000026.1 TPA_asm: Enterobacteriaceae bacterium UBA4747 UBA4747_contig_2, whole genome shotgun sequence (143186 bp)
Overview 1 RT 1: 61865-67028 bp Neighborhood of RT #1 [61865, 67028] PRK15048 DUF4156 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 61865-63511 bp Feature: domain Description: PRK15048 Location: 62093-63509 bp Feature: domain Description: PRK15048 Location: 62093 -63 509 bp Feature: gene Location: 63886-64239 bp Feature: domain Description: DUF4156 Location: 63955-64231 bp Feature: domain Description: DUF4156 Location: 63 955-6423 1 bp Feature: gene Location: 64584-66281 bp Feature: RT Description: RVT_N Location: 64647-64881 bp Feature: RT Description: RVT_N Location: 64647-64881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64935-65580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6493 5-65580 bp Feature: domain Description: GIIM Note: maturase Location: 65634-65865 bp Feature: domain Description: GIIM Note: maturase Location: 6563 4-65865 bp Feature: domain Description: HNHc Note: nucleases Location: 66081-66231 bp Feature: domain Description: HNHc Note: nucleases Location: 66081-6623 1 bp Feature: gene Location: 66418-66654 bp Feature: gene Location: 66711-67028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15048 (methyl-accepting chemotaxis protein II; Provisional), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)