myRT

myRT report for GCA_002404765.1_ASM240476v1

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Seq: DHKJ01000042.1 TPA_asm: Ruminococcus sp. UBA4697 UBA4697_contig_3447, whole genome shotgun sequence (259717 bp)
Overview 1 RT 1: 231742-249553 bp Neighborhood of RT #1 [231742, 249615] DUF4316 dnaG DUF3991 Toprim_2 LPD25 YodL MutS_I COG4646 RVT-GII COG4646 KOG0390 DNA_S_dndA Feature: gene Location: 231742-233793 bp Feature: domain Description: DUF4316 Location: 232690-232804 bp Feature: domain Description: DUF431 6 Location: 232690-232804 bp Feature: gene Location: 233797-243597 bp Feature: domain Description: dnaG Location: 233953-234094 bp Feature: domain Description: dnaG Location: 233953-234094 bp Feature: domain Description: DUF3991 Location: 234172-234382 bp Feature: domain Description: DUF3991 Location: 2341 72-234382 bp Feature: domain Description: Toprim_2 Location: 234415-234679 bp Feature: domain Description: Toprim_2 Location: 23441 5-234679 bp Feature: domain Description: LPD25 Location: 236980-237310 bp Feature: domain Description: LPD25 Location: 236980-23731 0 bp Feature: domain Description: YodL Location: 237472-237775 bp Feature: domain Description: YodL Location: 237472-237775 bp Feature: domain Description: MutS_I Location: 238060-238255 bp Feature: domain Description: MutS_I Location: 238060-238255 bp Feature: domain Description: COG4646 Location: 241552-243583 bp Feature: domain Description: COG4646 Location: 241 552-243583 bp Feature: gene Location: 244297-246189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244591-245305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244591 -245305 bp Feature: gene Location: 246312-248402 bp Feature: domain Description: COG4646 Location: 246354-246927 bp Feature: domain Description: COG4646 Location: 246354-246927 bp Feature: domain Description: KOG0390 Location: 247284-247611 bp Feature: domain Description: KOG0390 Location: 247284-24761 1 bp Feature: gene Location: 248479-249615 bp Feature: domain Description: DNA_S_dndA Location: 248491-249553 bp Feature: domain Description: DNA_S_dndA Location: 248491 -249553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4316 (pfam14195), dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), LPD25 (pfam18840), YodL (pfam14191), MutS_I (pfam01624), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, KOG0390 (KOG0390, DNA repair protein, SNF2 family )
DNA_S_dndA (TIGR03235)

Seq: DHKJ01000044.1 TPA_asm: Ruminococcus sp. UBA4697 UBA4697_contig_5119, whole genome shotgun sequence (80059 bp)
Overview 1 RT 1: 61090-76697 bp Neighborhood of RT #1 [61090, 76822] YodL LPD11 AdoMet_MTases COG4646 RVT-GII Intron_maturas2 HNHc DUF3991 Toprim_2 Feature: gene Location: 61090-61320 bp Feature: gene Location: 61360-72210 bp Feature: domain Description: YodL Location: 63829-64123 bp Feature: domain Description: YodL Location: 6382 9-6412 3 bp Feature: domain Description: LPD11 Location: 65104-65314 bp Feature: domain Description: LPD11 Location: 65104-65314 bp Feature: domain Description: AdoMet_MTases Location: 68467-68881 bp Feature: domain Description: AdoMet_MTases Location: 68467-68881 bp Feature: domain Description: COG4646 Location: 69367-71752 bp Feature: domain Description: COG4646 Location: 69367-71752 bp Feature: gene Location: 72744-74561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73008-73833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73008-73833 bp Feature: domain Description: Intron_maturas2 Location: 74010-74253 bp Feature: domain Description: Intron_maturas2 Location: 74010-742 53 bp Feature: domain Description: HNHc Note: nucleases Location: 74358-74532 bp Feature: domain Description: HNHc Note: nucleases Location: 74358-74532 bp Feature: gene Location: 74595-75668 bp Feature: gene Location: 75737-76822 bp Feature: domain Description: DUF3991 Location: 76148-76409 bp Feature: domain Description: DUF3991 Location: 76148-76409 bp Feature: domain Description: Toprim_2 Location: 76436-76697 bp Feature: domain Description: Toprim_2 Location: 76436-76697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD11 (pfam18824), AdoMet_MTases (cl17173), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3991 (pfam13154), Toprim_2 (pfam13155)

Seq: DHKJ01000038.1 TPA_asm: Ruminococcus sp. UBA4697 UBA4697_contig_5806, whole genome shotgun sequence (53433 bp)
Overview 1 RT 1: 31564-36368 bp Neighborhood of RT #1 [31564, 36368] DUF3801 VirD4 RVT-GII HNHc TraG-D_C Feature: gene Location: 31564-32043 bp Feature: domain Description: DUF3801 Location: 31642-32026 bp Feature: domain Description: DUF3 801 Location: 3 1642-3 2026 bp Feature: gene Location: 32115-32945 bp Feature: domain Description: VirD4 Location: 32349-32931 bp Feature: domain Description: VirD4 Location: 3 23 49-3 293 1 bp Feature: gene Location: 33737-35626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34046-34790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4046-3 4790 bp Feature: domain Description: HNHc Note: nucleases Location: 35351-35498 bp Feature: domain Description: HNHc Note: nucleases Location: 3 53 51-3 5498 bp Feature: gene Location: 35678-35995 bp Feature: domain Description: TraG-D_C Location: 35768-35846 bp Feature: domain Description: TraG-D_C Location: 3 5768-3 5846 bp Feature: gene Location: 36240-36368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)