myRT

myRT report for GCA_002406915.1_ASM240691v1

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Seq: NXFL01000057.1 Klebsiella pneumoniae strain C16 plasmid pIncR NODE_57_length_20912_cov_60.4843_ID_113, whole genome shotgun sequence (20912 bp)
Overview 1 RT 1: 14004-17457 bp Neighborhood of RT #1 [14004, 17495] PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Feature: gene Location: 14004-14435 bp Ori: PCL73971.1 Feature: domain Description: PRK10276 Location: 14055-14418 bp Feature: domain Description: PRK1 0276 Location: 1 4055-1 441 8 bp Feature: gene Location: 14593-14844 bp Feature: gene Location: 14844-16328 bp Ori: PCL73973.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15246-15936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5246-1 5936 bp Feature: gene Location: 16480-17177 bp Feature: domain Description: Zn_Tnp_IS1 Location: 16486-16588 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 6486-1 6588 bp Feature: domain Description: HTH_Tnp_IS1 Location: 16609-16741 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1 6609-1 6741 bp Feature: gene Location: 17187-17495 bp Feature: domain Description: Rep_3 Location: 17193-17457 bp Feature: domain Description: Rep_3 Location: 1 71 93-1 7457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051)

Seq: NXFL01000002.1 Klebsiella pneumoniae strain C16 NODE_2_length_293188_cov_29.1916_ID_3, whole genome shotgun sequence (293188 bp)
Overview 1 RT 1: 247486-250544 bp Neighborhood of RT #1 [247486, 250546] RVT-Retrons HTH_XRE DinI Feature: gene Location: 247486-247680 bp Feature: gene Location: 247679-248110 bp Feature: gene Location: 248249-249199 bp Ori: PCL78403.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 248429-248972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4842 9-2 48972 bp Feature: gene Location: 249177-249485 bp Ori: PCL78404.1 Feature: domain Description: HTH_XRE Location: 249189-249354 bp Feature: domain Description: HTH_XRE Location: 2 49189-2 49354 bp Feature: gene Location: 250106-250546 bp Ori: PCL78405.1 Feature: domain Description: DinI Location: 250361-250544 bp Feature: domain Description: DinI Location: 2 50361-2 50544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DinI (pfam06183)

Seq: NXFL01000003.1 Klebsiella pneumoniae strain C16 NODE_3_length_219637_cov_25.5043_ID_5, whole genome shotgun sequence (219637 bp)
Overview 1 RT 1: 133560-138443 bp Neighborhood of RT #1 [133560, 138445] umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 133560-134825 bp Ori: PCL78091.1 Feature: domain Description: umuC Location: 133563-134823 bp Feature: domain Description: umuC Location: 13 3 563 -13 4823 bp Feature: gene Location: 134981-135238 bp Feature: gene Location: 135777-136406 bp Ori: PCL78163.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 135780-136227 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 13 5780-13 6227 bp Feature: gene Location: 136607-137275 bp Ori: PCL78093.1 Feature: domain Description: PRK09951 Location: 136610-137273 bp Feature: domain Description: PRK09951 Location: 13 6610-13 7273 bp Feature: gene Location: 137480-138445 bp Ori: PCL78094.1 Feature: domain Description: PRK15110 Location: 137483-138443 bp Feature: domain Description: PRK15110 Location: 13 7483 -13 8443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)