myRT

myRT report for GCA_002407285.1_ASM240728v1

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Seq: MJDI01000064.1 Escherichia coli strain NA267 contig064, whole genome shotgun sequence (11963 bp)
Overview 1 RT 1: 6758-10405 bp Neighborhood of RT #1 [6758, 10527] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 6758-6964 bp Feature: gene Location: 6966-7154 bp Feature: gene Location: 7936-9603 bp Ori: PCM06970.1 Feature: domain Description: RVT_N Location: 7984-8221 bp Feature: domain Description: RVT_N Location: 7984-8221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8272-8914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8272-891 4 bp Feature: domain Description: GIIM Note: maturase Location: 8965-9199 bp Feature: domain Description: GIIM Note: maturase Location: 8965-91 99 bp Feature: domain Description: HNHc Note: nucleases Location: 9409-9568 bp Feature: domain Description: HNHc Note: nucleases Location: 9409-9568 bp Feature: gene Location: 9917-10108 bp Feature: gene Location: 10105-10527 bp Ori: PCM06972.1 Feature: domain Description: DUF1380 Location: 10108-10405 bp Feature: domain Description: DUF1 380 Location: 1 01 08-1 0405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MJDI01000008.1 Escherichia coli strain NA267 contig008, whole genome shotgun sequence (162993 bp)
Overview 1 RT 1: 127748-133857 bp Neighborhood of RT #1 [127748, 133916] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 127748-128668 bp Ori: PCM17446.1 Feature: domain Description: AbiEii Location: 127790-128531 bp Feature: domain Description: AbiEii Location: 12 7790-12 8531 bp Feature: gene Location: 128655-129437 bp Ori: PCM17447.1 Feature: domain Description: AbiEi_3_N Location: 128667-128928 bp Feature: domain Description: AbiEi_3_N Location: 12 8667-12 892 8 bp Feature: domain Description: AbiEi_3 Location: 128940-129396 bp Feature: domain Description: AbiEi_3 Location: 12 8940-12 9396 bp Feature: gene Location: 129753-132962 bp Ori: PCM17448.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130281-130770 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1302 81-130770 bp Feature: domain Description: nitrilase Location: 132276-132873 bp Feature: domain Description: nitrilase Location: 132 2 76-132 873 bp Feature: gene Location: 133309-133779 bp Feature: gene Location: 133776-133916 bp Ori: PCM17450.1 Feature: domain Description: SfsB Location: 133785-133857 bp Feature: domain Description: SfsB Location: 133785-133857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)