myRT

myRT report for GCA_002407295.1_ASM240729v1

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Seq: MKHD01000044.1 Escherichia coli strain NA056 contig044, whole genome shotgun sequence (26117 bp)
Overview 1 RT 1: 18766-25090 bp Neighborhood of RT #1 [18766, 25989] Q RVT-Retrons Phage_GPA Feature: gene Location: 18766-19785 bp Ori: PCM20584.1 Feature: domain Description: Q Location: 18769-19780 bp Feature: domain Description: Q Location: 1 8769-1 9780 bp Feature: gene Location: 19828-20535 bp Feature: gene Location: 20532-21716 bp Ori: PCM20586.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20676-21258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20676-21 258 bp Feature: gene Location: 22228-24066 bp Feature: gene Location: 24220-25989 bp Feature: domain Description: Phage_GPA Location: 24226-25090 bp Feature: domain Description: Phage_GPA Location: 24226-25090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, Phage_GPA (pfam05840)

Seq: MKHD01000014.1 Escherichia coli strain NA056 contig014, whole genome shotgun sequence (135454 bp)
Overview 1 RT 1: 64584-72387 bp Neighborhood of RT #1 [64584, 72422] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase proA Feature: gene Location: 64584-65504 bp Ori: PCM25693.1 Feature: domain Description: AbiEii Location: 64626-65367 bp Feature: domain Description: AbiEii Location: 6462 6-65367 bp Feature: gene Location: 65491-66273 bp Ori: PCM25694.1 Feature: domain Description: AbiEi_3_N Location: 65503-65764 bp Feature: domain Description: AbiEi_3_N Location: 65503-65764 bp Feature: domain Description: AbiEi_3 Location: 65776-66232 bp Feature: domain Description: AbiEi_3 Location: 65776-662 32 bp Feature: gene Location: 66589-69798 bp Ori: PCM25695.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 67117-67606 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 67117-67606 bp Feature: domain Description: nitrilase Location: 69112-69709 bp Feature: domain Description: nitrilase Location: 69112 -69709 bp Feature: gene Location: 70145-70615 bp Feature: gene Location: 71169-72422 bp Ori: PCM25697.1 Feature: domain Description: proA Location: 71196-72387 bp Feature: domain Description: proA Location: 71196-72 387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), proA (TIGR00407)

Seq: MKHD01000048.1 Escherichia coli strain NA056 contig048, whole genome shotgun sequence (19081 bp)
Overview 1 RT 1: 12086-17928 bp Neighborhood of RT #1 [12086, 17963] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 12086-12364 bp Ori: PCM20387.1 Feature: domain Description: DUF5339 Location: 12149-12350 bp Feature: domain Description: DUF53 3 9 Location: 12149-123 50 bp Feature: gene Location: 12702-13724 bp Ori: PCM20393.1 Feature: domain Description: Asparaginase_2 Location: 12783-13716 bp Feature: domain Description: Asparaginase_2 Location: 12783 -13 716 bp Feature: gene Location: 14257-14703 bp Ori: PCM20388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14563-14665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14563 -14665 bp Feature: gene Location: 15349-16710 bp Ori: PCM20389.1 Feature: domain Description: DcuC Location: 15352-16684 bp Feature: domain Description: DcuC Location: 153 52-16684 bp Feature: gene Location: 16707-17963 bp Ori: PCM20390.1 Feature: domain Description: PRK13381 Location: 16713-17928 bp Feature: domain Description: PRK13 3 81 Location: 16713 -17928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MKHD01000027.1 Escherichia coli strain NA056 contig027, whole genome shotgun sequence (71713 bp)
Overview 1 RT 1: 42649-49043 bp Neighborhood of RT #1 [42649, 49066] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 42649-43566 bp Ori: PCM22634.1 Feature: domain Description: PFLE_PFLC Location: 42685-43540 bp Feature: domain Description: PFLE_PFLC Location: 4 2685-4 354 0 bp Feature: gene Location: 43703-44608 bp Feature: gene Location: 45094-45633 bp Ori: PCM22636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45424-45502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 24 -4 5502 bp Feature: gene Location: 45661-46182 bp Ori: PCM22637.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45667-45949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5667-4 594 9 bp Feature: domain Description: GIIM Note: maturase Location: 45997-46177 bp Feature: domain Description: GIIM Note: maturase Location: 4 5997-4 6177 bp Feature: gene Location: 46765-47994 bp Ori: PCM22638.1 Feature: domain Description: YesM Location: 47245-47986 bp Feature: domain Description: YesM Location: 4 724 5-4 7986 bp Feature: gene Location: 48011-49066 bp Ori: PCM22639.1 Feature: domain Description: YesN Location: 48014-48404 bp Feature: domain Description: YesN Location: 4 8014 -4 84 04 bp Feature: domain Description: YesN Location: 48746-49043 bp Feature: domain Description: YesN Location: 4 874 6-4 904 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)