myRT

myRT report for GCA_002407385.1_ASM240738v1

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Seq: MVIO01000004.1 Escherichia coli strain NA090 contig004, whole genome shotgun sequence (27300 bp)
Overview 1 RT 1: 18841-22336 bp Neighborhood of RT #1 [18841, 22341] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 18841-18959 bp Feature: gene Location: 19049-19210 bp Feature: domain Description: PRK09413 Location: 19052-19211 bp Feature: domain Description: PRK0941 3 Location: 1 9052-1 921 1 bp Feature: gene Location: 19722-21074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20043-20661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20043-20661 bp Feature: domain Description: GIIM Note: maturase Location: 20709-20940 bp Feature: domain Description: GIIM Note: maturase Location: 20709-20940 bp Feature: gene Location: 21283-21684 bp Feature: gene Location: 21784-22341 bp Ori: PCM39572.1 Feature: domain Description: PinE Location: 21787-22336 bp Feature: domain Description: PinE Location: 21 787-22336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: MVIO01000146.1 Escherichia coli strain NA090 contig146, whole genome shotgun sequence (38760 bp)
Overview 1 RT 1: 26159-32190 bp Neighborhood of RT #1 [26159, 32327] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 26159-26299 bp Ori: PCM30711.1 Feature: domain Description: SfsB Location: 26168-26240 bp Feature: domain Description: SfsB Location: 2 6168-2 62 40 bp Feature: gene Location: 26296-26766 bp Feature: gene Location: 27113-30322 bp Ori: PCM30713.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 27641-28130 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 7641-2 8130 bp Feature: domain Description: nitrilase Location: 29636-30233 bp Feature: domain Description: nitrilase Location: 2 9636-302 33 bp Feature: gene Location: 30617-31420 bp Ori: PCM30714.1 Feature: domain Description: AbiEi_3_N Location: 30650-30911 bp Feature: domain Description: AbiEi_3_N Location: 30650-30911 bp Feature: domain Description: AbiEi_3 Location: 30923-31379 bp Feature: domain Description: AbiEi_3 Location: 3092 3-31379 bp Feature: gene Location: 31407-32327 bp Ori: PCM30715.1 Feature: domain Description: AbiEii Location: 31449-32190 bp Feature: domain Description: AbiEii Location: 31449-32 190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: MVIO01000019.1 Escherichia coli strain NA090 contig019, whole genome shotgun sequence (198570 bp)
Overview 1 RT 1: 178253-182536 bp Neighborhood of RT #1 [178253, 182544] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 178253-179158 bp Feature: gene Location: 179132-179419 bp Feature: gene Location: 179644-180183 bp Ori: PCM38009.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179974-180052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179974-180052 bp Feature: gene Location: 180211-180732 bp Ori: PCM38010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180217-180499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180217-180499 bp Feature: domain Description: GIIM Note: maturase Location: 180547-180727 bp Feature: domain Description: GIIM Note: maturase Location: 180547-180727 bp Feature: gene Location: 181054-181242 bp Feature: gene Location: 181315-182544 bp Ori: PCM38012.1 Feature: domain Description: YesM Location: 181795-182536 bp Feature: domain Description: YesM Location: 181795-18253 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MVIO01000062.1 Escherichia coli strain NA090 contig062, whole genome shotgun sequence (17630 bp)
Overview 1 RT 1: 10511-13506 bp Neighborhood of RT #1 [10511, 13673] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 10511-10948 bp Feature: gene Location: 10863-11288 bp Feature: gene Location: 11242-12765 bp Ori: PCM35200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11515-12247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11515-1224 7 bp Feature: domain Description: GIIM Note: maturase Location: 12322-12520 bp Feature: domain Description: GIIM Note: maturase Location: 12322-12520 bp Feature: gene Location: 12840-13333 bp Feature: domain Description: PHA02517 Location: 12849-13020 bp Feature: domain Description: PHA02517 Location: 1284 9-13020 bp Feature: gene Location: 13260-13673 bp Ori: PCM35201.1 Feature: domain Description: COG2085 Location: 13359-13506 bp Feature: domain Description: COG2085 Location: 13359-13506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )